AMCG00000431 (LOC107732571)


Basic Information

Item Value
gene id AMCG00000431
gene name LOC107732571
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14548662 ~ 14567052 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000431
GGCGTGCGGAGTCACCGACTGTTTGTAAacagcagagggagaggagcGCGGAGACAGAGGAGGGGGCGGACAGGGCCAGGTCGGAACCAGAACTGGACAGCCGCTTGAAACCACCCTTATATACCGGCTTACAAGAGGAAATCGCATCTGATGAAACACTGCTGTTGTCTGTGGGGACTCCACGAACCAAATACATGCCAGCAAACCAACAACAAACCCATCACCGAAAACGGCACAGCCGGATCCCAGAGAAATGACACCACTTTAATCTTCAGCTAATAATATCTTCATCTCCGCCGATCGAATCCGATTTGGGATTGGAGCGAGAAAGAGGCGACAGGGATCCGTATCCCACGACAGACACTACAGATTGTATTTACCCGCAGCTGCTTATGTGTCCGAATGACAGCTGTGCAGATTGAAATGGACTATTTTCAGAGACGGCATTGCTGGATTTCGGACAGTATTTATGAGTGATAAGGACCACCGTGTGTTCTTTAGGTCGAGCTGATACAGAAAACATCCCGGCTTCTTGGCTATATTTGTGATCGCTAGGGAGCTGGTTGTGATCTGTCCTGTGAAGTTCATGGTGTATCATCCCATATGCCATGTTCCTTAATGCTGGTGTTCATAATAAGCCATGTCTGAAGTAGCGACGAAGATCGGGATCTGGGACTTTGCGGTTGTTTTGTAGCCATGATCATTTGCAATACCGACATCACCTACGGCTAACAGACTGACACTGCTGCCTGTCAGTGCCAGTTTGCGAGGCCCGAAATGCCATTGACTGATCGCATGCTGTCTGGCTGATGCTGCTCGACATACAGATATATCCCTGCAATCCCATGCTTTCATGCTTATtgccttttcaaatatttattacatcGGAATGCCAATTCCAGTAACTGTGCTTGTTACAATTTAAGAATAGAGGCTGTGCCATAAATTAATAGATGTTTCGCCTGTTCACAGTTTTCTTCAGTACTTTTTTTTGGTAGTTGTTACTGAATTTATTGGCCATATACTACTGCTAGTGAAACAGTGAAGTAGGATGTCAGCAAAAACTCTCAGCAGATTATCCTTGTTTCACTCCTGTAAAAAATACTGCAGCTCATCGGGATATTCCACCTCTGGTTCAGATATCACCACCAGTTGTTTTTAGTAGAAGATTGAATTAAGGCCCCTTGCTTTTTGTCACCTGTAGGTCAGGTGCGCTCTGTACCATAATCAGAAATGCCTTGGCCATTTTCAGAGTCGATTAAGAAGCGGGCATGCAGATATCTGCTGCACCGATACCTTGGCAATTTTCTTCAGGAGAAACTGAGTCTGGACCAGCTCAGTTTGGACCTCTATCAGGGCACTGGATCCCTGGCACAGGTTCCTCTGGACAAATGGTCCTTGAACGAGATCCTGGAGTCCGTAGACGCTCCCTTCGAGGTGACCGAAGGCTTCATTCAGAGCATCTCCCTGTCGGTGCCCTGGGCTTCTCTGCTGCAGGAGAACTGTGCTCTGGAGGTGAAGGGGCTAGAGATGGTCTTCAGGCCCAGGCCTAGAATGGCGTCGGGCACAGAGCCAATGTACTGGTCCAGTTTTATGACCAGCAGCATGCAGCTGGCAAAGGAGTGTCTGAGCCAGAGGCTGACGGACGACCAGGGAGAAGGGTTCCAGCCCCTGGAAGGGCTCGAGAAGTTTGCAGAGACCATAGAGACAGTTCTAAGAAGAGTGAAGGTCACATTTCTAGACACAGTTTTCAGGATTGAACATGTGCCGGAAAACTCCAAAACTGGAATCGCTCTTGAAATGCGAATTAGTAGGATCGTGTACTGTGACGAGACTGGAGAGGAGTGTTCTGGTATGAACGTTCACCAGCCTACAATGTTTGCTCATAAAAACCTGCAGCTCACTGGCGTCACTGTCTTCTGGGATGAATTCTCAGAGGCTGCCAGGACCTGTCTGAAATCCCCGAACGCACAGACGGAAACGGAACCAAAACTGTCCCCCAGCTGGAACCCCAAAATCATCTGCGAGCCGCACCCTCAGTTCACAGAGACGGTGTCGGAGGTGGCGCCGTTTGAACCCGTGCAGATCGGGAGTCTGAGTGGGAGAATCGAACTCGGCCTCGTCCTGAAGCAGAACGAAGCCCTTCCTGGAGCAAAGTTGGACGTTGATGGACAGATTGATTCAGTCAATGTCCTTCTGTCTCCACGTCAAGTCCACTTACTGTTAGACATGCTGGGAGTCTTTTCAGGACCAGggggctTGGAGCGGGGCAATCTTGGCAGTAAGGACCGGAAGAGCAGGCCCATGCAGCAGGAGGACGAGTACCGGCTGCACATGGAGCTGAACCGCTGTCTGAAGAAAGACACACTGGCTGCAGGGGTGCTGGCCGACACGGACTACTTTGAGAGCGAGACCACAAGGACGACGTCTAGCCGCGAAGAAGATGTATTCTTCTCCATGGCCGAGATGGACATGTCTCACAGCTTATCGTCCCTCCCGCCCCTTGGAGACCCACCTACTGTTGACCTGGACCTGTCCTTAAACAGCAACTACACCCCGTCCCCAGGGGAATCCCCATCAGGCAATGTGGCGACGGTGTGGGATGAGTATCTGGATGCCccgagacacagagagaagccAGCACCGGAGTCCCCCTTTCTGTCCAGAGACAGTCCGCCCCAGCAGAAGCTCCTGAGACAGGCCTCCCATCCTCCAAAGTCACACTGTGCGGACGAGTCCCGGCCAGAGGTGGTGTTCCGACTCGCTCTGGGCAGCCTGGCCGTGTCTGTCCTCCACATcgaccccctgccccccccagaGACGGCCCTCAACATCAACCCCCTCAAGCTCATGGCCTCGGACTTCTTCTGCCGCGTTGACAAGATCGACCCCGACGAACTGTCCAAGGGGGACTTCCTACATTTGCGGCCTGTGTTTGATGAGGCTTGCCCTTACGATCATCTCCGGTTCCTGGGAGCGGGTATGAAGGTGACTTATGAGCAGCGCCAGGGCTCCAGTCTGCGCAGTCTCAGCACTGACGTGTCGGTGGGACAGATGGAGTTGCTGGAGTGTCTCTTCCCCACAGATTCCCGCTCCAGCCCCCCACAGTACACAGAGctGGTGACATTTGACTCCATCACCAACAAAGATTCCCTGCCTACAGCATGCCTTCACCTGATGTACAAGTTTTCTGAAAGACGAGGACCCCAGGGTAGTCAGGTGCGTTTAAGCTCCATGCCTCAGAAAGCTGATTTCCAGATTGAACTGGGATCTGTCCACTCTGAGCTGGACATCAGTATTGTGGACAGACTGAACTCTTTACTGCAGCCACAGAAACTGGCCACAACTGAAATGATGGCATCCCACATGTATACCTCGTACAATAAACATGTCAGCCTGcACAAGGCTTTCACTGAAGTTTTCCTTGACGATTCAAGGACGCCAGCGAATTGCCACATTTCTGTGATGGTGAACGTGCCCGTGTTGAATCTGGCGGTGCGGTTTCCGATTCCCGACCTGCGCTCCGACCAGGAGAGGGGCCCCTGGTTCAAGAAATCGCTACAGAAGGAAGTTCTGCACTTGGAGTTCAAAGATGTTGAATTCAAAACCGAATTTACAGGTGGATCCTCACCAGAACAAACCAAATTGGAGCTTACATTCAAAGAGTTAACAGGGAAGTTTCAAGCTGAACGAGACCAGCCAGCTGTCCGGTTCTTCCGGGTGTCTCATGGCATGGATGGAGACATGGGCTCTTCGGACAGCGGCAAATTTGACTGGCCTCGGATTGTGCTGAAGGTGAACCCCATGGCTGTCCACTCTATCCTGGAGCGCGTGACGACCGAGGAGGAGGACGGGGCTGAGGGCCACTCGccggaggaggaagagggaggggcTCACTCCCTGAAGGACGTATGTGATTTCGGAAAGCCAGAGCCCTCGCCCTTCTCCTCCCGCAGGGTCATGTACGAAAATGAAGAGATGGTCATCCCGGGAGACGTGGCCGAAATGATTGAATTCCAGGAGAAGACGATGAGCAACTCTCGGTACATTTTGGAGCTGTCGTTACCAAACGTGGAATTATCGCTGCCAAACAAGGCCTTTTACGAGAAGCTGCACAACAGAATAAATAATGACCTGCTGCTATGGGAGCCAACTGCTCCTTCTCCTGTTGAAACGTTTGAAAACATGTCGTATGGTGTCGGCCTGTCAGTGGCCAGCCAGCTCATCAATACCTACAGCAAGGACAGCTTCAGCCAGTTCAGAACAGGAGCCCCCGATGAGGACGAGAGCGGGTCTGAGGATGAGGCTATGCCATACTGCTCCTCAGCGGACTTTGGTCTCAGATCTCGTCGAAAGAAGAAGCATGAATCCCAGAGCAAAACCTCCCAGAGCCTCTTCTCCGTCATTCTGAGCATCAATCACGGGCTGGTGGCCCTGCAGACTGATGCCAAGCAAGAAGATGGGACAATAATGAAGGACCGGCACGGAGAGTTCTGGTTAGAATTTGAAAGTGGGGTTCTGTTCAGTGTAACCCAGTATGAAGGCTATGAAGACCAGCACTACATCTGTCTTCACACCAATACCCTGTGTCTTTATCACCAAGGCATAGTACATGGGAACGTCCCAGATTGTGATGTAAAGCTGCCCAGTAAGACTCGTCCTCACTGGCTGGAGCCGGCTATTTATCGCTCAGAGGAGGCATCCCACAGCAGGTCCTGCCTGCCCGAGGGCTTGGGAGTGGATGGGCAGAACATGCTGTCCGTGGCAGTGAAGATCTTCTCCCAGAATGTGGACCGCAGCGTGAAGGAGTTCCTGATCTCTGTGGGCGTGAGAGGGTCCACCCTGCAGCACCGCGTGGTTCCCCCCAGTCTCGGCTGGTATGAGCAGATTCTAGACTTCCTCAACGTGTCGGACGAGCCTGTGCTGGGCTACACCCCTCCGGCCTCCATCACCACCTTCCACCTCCACCTGTGGAGCTGCTCCCTGGACTACAGACCTCTATACTTGCCCATCCGCTCGCTGCTCACGGTGGAGACGTTCAGTATCTCCAGCAGTGTGTCCCTGGACAGGTCGTCCTCCACGCTCAGGATCATTCTGGATGAAGCAGCCTTGTTCTTATCTGACAAGTGCAATGCGGTTTCAGTCAATCTCAATAGAGATTACGTGCAGGTTGTGGATATGGGTCTCCTGGAGTTGAGGATTACAGCAGCTAAACCAGGAGTGGATGGAGAGATGACGGAGCCCAGATTCGAGCTGCGCTGCTCCAGTGATGTCATTCATATCCGCACATGCTCGGACTCCTGCGCGGCGCTCATGAACCTCATTCAGTACATCGCCAGCTATGGGGACCTCCTCCCTCCGCCCGCCCCGGAGACCAAGACCGGGAGCTCCAAACAGAGAGCCAAGCTCTGGGTTTGTAACCAACCGATCAAACGTGTCTTCCAGCTGGACGTCCTCAACAGGCCTGCCTCCCAGACTCCTCTGCTCCCAGAGGCCGAACAGCAGATGCTGCAGGACCTGATGAGTGAAGCCATGGAGGAGACCGACAGCGGGCACACGCTGTCGCCACAGGAGCGCCAGCACAACGGTATACATGAGGAGTTAAATCATACCCTAGAGCCATCCCGCTCCGACCTTTTCCTTTTCCCTGATGAGAGCGGGAATCTCTCCCAGGAGCCCAGCCCCACCTTCACCCCCTACCACACCCCGCTCATCTACACGGCCACGGCCGACGTCGTCCCGGAGAGCGATGACTTCTGCATCCTGGACACGCCCGGTACAGGTGCTTTGGACCGGGATGAGGAGCCCGTGGTGAACCTGCTGACGTCAGACTCCGTTCAGATTAAAGAGAATCACTTCAGCCTGCCTCTGGGACGGACCGACTCCAACAAAGCCCCCTTGCACTTCCCCGTACCGGAGATTAGATATCTGATCAAGGAAATCTCCATTGTATGGCATCTTTATGGGGGAAAGGACTTTGGGATGGGGCCGTTTATTTTGTCTCCAGCCAAGAGCCGAGTCTGCACCCCACACAGCTCCCCCTCTCAGACCCCAGTGAGGCAGGGCCGCTCTTCGGGGCGCATAGGAGGCGGCAAGGGGAGGAACCCCGATGTGCTGATTGAAATCCAGCTCAGTAAGGTGAAGTTCCAGCATGAAGTCTACCCTCAGGTCCAGTCCGAGTCCGAGTCCAGTGTGGCCGAGCAGCCCGTGTCCCGCCAGGTCTTCATCGTCCAGGACCTGGAGATCCGGGACCGCCTGGCCGCCTCCCAGATGAACAAATTCCTCTACCTCTACTCCAGCAAGGAGATGCCCAGGAAGGCGCACTCGAACATGCTCACAGTGAAGGCCCTGCACCTCTGTCCGGAGGCCGGCCGCGCCCCCCAGGAGTGCTGTCTGCGCGTCTCCCTGATGCCGCTGCGCCTCAACATCGATCAGgATGCACTGTTTTTCATGAAAGACTTCTTTGCCAGCCTTGCTGCTGAGGTAGAATTATTGGCGCCACCAGATCAAGAAGtgaagAAGCCTCCTGCTCCAGACCTCTCCTGCAGCTTTGCGAAGCACACGGTCAGCAGCCAGGACCCGGCGCCCATCATCTCCGTACCGGGGCAGAGCAGGCCTAGCCAGAATGGCATGACGCTCTCGGGCAGCACCGACCCCGGCGACGCCGAGCCCGTGGCCGGGACGTCTTTCACGGACCAGCCCATCTTCTTCCGAGAGTTTCGGTTCACGTCTGAAGTCCCCATTCGTCTGGATTATCACGGAAAGCATGTGTCAATGGAACAGGGCACATTTGCTGGCATTGTGATTGGCTTAACTCAGCTCAACTGCTCGGAGCTGAAACTCAGGCGGCTGTGCTACAGACAAGGACTGCTGGGTGTGGACAAGCTCTTCTCTTATGCAATAAATGAGTGGCTCAATGACATCAAGAAGAATCAGCTGCCGGGAATTCTGGGAGGAGTGGGTCCGATACACTCTCTGGTACAGCTAGTTCAGGGCCTGAGGGACCTGGTCTGGCTGCCGATTGAACAGTACCGCAAGGATGGCCGAATCGTGAGGGGTTTCCAACGTGGTGCCGCCTCCTTCGGTACGTCTACTGCAATGGCCGCTCTGGAGCTTACCAACCGCATGGTGCGGACCATACAGGCTGCAGCAGAGACGGCCTATGACATGGTGTCTCCAGGACCCGATGACAGCGAACTGAAAAGAATAAAGCGCTTCTCCCATTATCGACTGGCTCACCAGCCGGTGGACCTGCGTGAGGGCGTGGCCAAGGCATACAGCGTCGTTAAAGAGGGGATCACGGACACGGCGCTGACGATCTACGACACGGCCACGCGGGAGCACGAGCAGCGGGGCGTGACAGGGGCGGTGGGCGGCGTGCTGCGGCAGATCCCCCCCGCCGTGGTCAAACCGCTCATTGTGGCGACCGAAGCCACCTCCAACGTGCTGGGAGGGATGAGGAACCAAATCCGCCCCGACGCCAGGCAGGAGGAGTCCCAGAAGTGGCGGCTCGGGGAAGAGTGAATCTAAAACTCCGTTTGCATCGATTAGCACGCGATACACGGTACCGTCTGGAAGATGAGGAACACTTGTCTAGTCTGCAGCCTGTCGTCGTTTATCACATACTGAACTTTTACAAGGCTGGCCCCATGTTTTTGTGAGACAGACCTGGAAGCATTACGTAATGCCATATCTAGAATACTAAGAGCAGTGCTGGTGTTAACAATAATATTGGTTTGATTGTGTCGTGAAGCAGACCCTTCTCACAAACTTGAATAGTGTGAGCTTTTAATGAACCTCAAGCTTGCGTTTCCTTCCCAAGGCCCCTGCAGTGCCTTCTGTGAGTATCCTGGTTATTACGCTATGAAACGGTACTGTAAAACATGAGGTTTAATGATCTGGTCTAAAGACTTCCATAGCACGTGTTTTTTGTGCCATGTTATCCCTGTAGaggaattattttttaacatgcgTCAGCTGTGTTGTGATTCGCTGTGTACTGCTGATCTTAATCGCATGGGGACAGTTTCACAAAGACCTGCTTTCTCTGCATAAGCAGTCTTGATATTCAtgtcaagcttttttttttgtgtgtctgtggttaaatgacaaatatgcttctatggactttttttttttcttctctaatgaatcattttctgttcttttgaGGGAAATGAAAGACTGCAGATTTGTGAAACTGATCCTAAAGGAAAAACTTGCTCTTCAAATATGGCTTTCATATACCGCCTTTATATTCCCTTTTGTGGTTATCAGTAACGTGAGCTATGCAGAATCGTACAGTCCTAAAACGAATTAAACTACATAGGCAATAGTTCTGTCTGCTTGTGGTGTGTTGTACTGTGAGttacatacaataacaaaaaaataacgcCACAAAAAATCTTAAATGGAGAGACGTAGGAGAGAAGGGATAAGATGGCAGTGGGagttttaaaattcaaataccAATCTCCCCCTTAATTTCTATTTTACCAAGAGCTTATAGCAGTAATAAGCACGGGACTGGCTTTGCTTTCAaactattttatacattttcacaaagagattttattttccaaatgaaaaatTTTGTCCATGATGGTTTTGCCTccccaaaaaaatatatctgatgTATGAAggatttttgtttgtatctgCTGGCTAGATTTGTCtgattttcatttgcattcttCATTGCATGTGGTCGATCTGATCTTAAAAGAAATCCCTGTGTTATGTTTCCCTTTTACATCTTGAAAAACGGGCAACTTCCTTTATTTTATGGGTTTGTTCTTTCCAAAACAATCTACTAGATGCAACCCTTAACAGTAAAACACGTTCCACTGCTGTTTcaccaatgttttattttaatacatttcactcTTAAAATCGAGGACGAGTGGATACATATGTAATAGTTATTGTAAATGGCTTTATATATAACTTGTTTTGTAGTATGTGTTCTTGGCAGTTATTGtttccttgtattttttttaatcaacataTCTAGATGTTACTGCTATTACTGCCTGACATATAACCAAAAGTCTTAAATATCACATTCACTTGGCTTTGTTAGCTATTTTTATACTTGAGGTGGGGTGTGGGACAGGGGGGATGAATTGCTTCAAATGTCTAGGACTATATTTATGTAGCAGTGATCTAGTGAGACCAAATTGGTTATTTATTCTAAGTACCTCCCCCCTGCTTTGATTTGAACACCACTTCAGTTGACTGGAGTGAAATGAAAGGGTGGTCcctgtatattttgtttatatgtactCTGTAATAGCAGTTTGTTTGTGAGCATATAGGGAATATTGCATAGGCTTGTATATAGTTAGTGTACAGACTGGATAAAGTTAATTTGTGCAAACGATCTTAAAGcatgtaataaatgcataaaagggaaaataaactatttaaattctC

Function

NR:

description
PREDICTED: autophagy-related protein 2 homolog B-like

GO: NA

KEGG:

id description
K17906 ATG2; autophagy-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000431 True 9435 mRNA 0.51 42 14548662 14567052

Neighbor

gene id symbol gene type direction distance location
AMCG00000433 NA coding upstream 3205 14542257 ~ 14545457 (+)
AMCG00000419 NA coding upstream 190741 14355891 ~ 14357921 (+)
AMCG00000420 NA coding upstream 206499 14341500 ~ 14342163 (+)
AMCG00000416 LOC106608304 coding upstream 208615 14316161 ~ 14340047 (+)
AMCG00000417 lin52,LOC107594798 coding upstream 260343 14286016 ~ 14288319 (+)
AMCG00000432 NA coding downstream 279 14567331 ~ 14572246 (+)
AMCG00000429 NA coding downstream 5672 14572724 ~ 14578029 (+)
AMCG00000430 NA coding downstream 13134 14580186 ~ 14585957 (+)
AMCG00000439 NA coding downstream 23748 14590800 ~ 14597614 (+)
AMCG00000437 fcf1,LOC106589732 coding downstream 185201 14752253 ~ 14755925 (+)
G150303 NA non-coding upstream 83360 14464892 ~ 14465302 (+)
G150106 NA non-coding upstream 802546 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 898611 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 1135598 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1706989 12833539 ~ 12841673 (+)
G150364 NA non-coding downstream 166180 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 557658 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 570654 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 587583 15154635 ~ 15155084 (+)
G150459 NA non-coding downstream 592556 15159608 ~ 15160123 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 394822 14133138 ~ 14153840 (+)
G150069 NA other upstream 856073 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 1517809 12966877 ~ 13030853 (+)
G149859 NA other upstream 1820759 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 2553636 11965555 ~ 11995026 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 364726 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2244401 16811453 ~ 16814365 (+)
G150750 NA other downstream 2368941 16935993 ~ 16938282 (+)
G150811 NA other downstream 2978402 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 3181458 17748510 ~ 17759582 (+)

Expression


Co-expression Network