AMCG00000432


Basic Information

Item Value
gene id AMCG00000432
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14567331 ~ 14572246 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000432
CGACGGAAGAGTAACCGGAAGTGAAAAGGCGTCTGTCGGAGTCTCTTAAAAATGACTGAAACCAAATGATTGACTTTCAACAGCAGCGCACATGAGGTAGTTTTATTTAGACGTGCACTCCGCGCACAGGTGTGGTGCGGCAGCGATGAACACAACGCCAATCCCCGTAATGACGATCTTCTCTGCAGGGATGTACTGTTATTGTAGGTCTCTGTGAACAATCAGGGCCCAGACTGGTGTTGTGGGGATGTCTGATATCACAGCCAACCTGCCCTCCTTGCAGTTCGAGGCCGGGCTGAGCGCCGGAGAGACGCCGCTCCTGGGTCTGCGAGAGCGGAGAGCGGGGCTGGTGTCCAGTGTCTGCGCCCATGCAGCCTTCCTCTGCAGCCGGGCCTGCTCCCTGCGAACAAGTGTATCAAATGGAAACCCCCCAATCTTCACCAAAGGTTCCTCCATAAAAATCTCAAATGAGCAACAAATGTTGAAAGTGGGGATTATCGGAGGAGGGCACGTTGGGAAGCAGCTAGCTCAGGTTCTGCTTGCAAGGGCCGACCTCCGACCATTGAACATCAGCATCTCCACAAGAAGACCTCAGAGTCTGGaggACTTTCGGAAGATGGGGGTTGAGTGTTTCTATGATAACCCGCGCGTGGCTGCCTGGGCGGATGTATGCGCCGAGATTCGCTCTGAGCTCCCCCAGTCCTGCACCGTTTACAGCTTTGTGACTGCTGTGCCATTGCCCAGACTCAGGCAGCTTTTGTCTCACAGTTCTGTTCTGAAGCCCGAGTTTGGGTTCATAGGCAGCGGCTCTGCCAGCATGTGGACCTCTGCTGGACCAGTCACTGACGCGCTGAAAGACCCAGCAGTTGTAGCAGCCACCTGTCCTCTTGGGATGAGCGgtGGTCTGTGTGTGGATATAAAGTGGTTTGTTGCCGTTCTCTACTGTCTACTGAATATGTGTACCACACTGAGTGGAGGTTCCCAGAAGGCTCTGGAATTGATGAATGAGTTATTTTTACTGAAAGGGACATCGCCATCCCATAATACATTGCAGTTCACACTTCTGAGCTTCATCAATGCCTCCTTTGCATCAACACTTTCATCAGATGAACCTTTACCTTGGATAAACTTGATCGATGCACAGCTGAAGGAGACACCATTATCCAAGATGCTGTCTGAACATCATGCCCTACGGGAGCATCTCACTGCAGTGTATTGCTCTGTGCTCGGAGTTTAACAGAGAAAATAGGCATCCCTCCAGTGGACCTTCTGTTAGTGTGCCATCTATGTGACCCAAATCCCAGCTTACTGATGGTTGCCCTCAACTACATGGGATAAAAATTGAACAGCACAATTACCAGAGCGCTTATCAGTGAGGTCCTGAGGTGAGAATACATAGAGCGTAGATCCCTGAGCAGCAGTCATGAGAGATTTCATCATATCTAATTacctacaaaaataaacttggcCAGGTGAGAATCATTAACTTCAGGTTGTGTTTACTTTGCCAGCTTTATTATCATCTTGTTTTCATCATTTGtcacacacaaaagcagaagtagggcatttatttttaagatttaaaatgcactctttgcaagctttttatttataaatcttataataaaatatgacacaaaactatctatgtattcattgtattgaTAGTTTGAGCCATGCCAGTGTTTGCATCATATTACTTTGTATTGAAAGCACCCTGGGTTTAATTTTTAACAATCACCACATACGCACAGCATTTAAAACTAAACCACTAGCTTTTTAGTTGTGCTGCACTCTGCAATTTAATAACAATCAATGTAAGTCTGGAAGGAACATCATGTGCTCATCCAATCTCAGcatgctttattttaagtgaaagaGGCGATGTGGGGAGTGCTTAGTTTGTGCTCTTCAGAAACTGGCTGTAAGTTAGAGAATCAGCACGCATTCCCGTCCGACTCCTTATCTCTAAATATAAACCCATAGTGTCTCTGGGGGGGAGGGCTATGCTCCTGTTCCACCTTGGCTCTTCTATGCTCAGCAACTCCCGAATCTGTCGCGAAATAACCTTACGGCAAAAGAGAAAGCAAGTTGGAATAGAAACATTGCACAGTAACCCATTTCAGTGTCTATTTTATATGAACGTATACTCTTAGCAAGtgtcacttttttcttttttgtgtattttgtttgctttctgacAATATTATTCCAATATGTACACTAGGCTTTTGGTACAGGTTACTCAAACTGTCAAACTGTCATACTGTCATCACTACACATGCTGCTTTGTATGATAAAAGGTACACACAGTGATATtcagcagaatatattttctctcatcTTCCTTACCTTCATATCCTCAAAATCTGTGATTCCTATTCTAGGAAGTGTGGAGCAATTAATTAAGATCAATTTTCTACCATTGATGAGATTGTCTGTAAAACATGCCTGAAGAGAGAACAAGAATGACAGCGAATTATAATATTGCATGCAACAATTACATTCTTGATTTTTCATATGCATATTCACCACATATTCACGTTTAATTCTGTTCTACAGcgtttaacatttttaagacTGGAAACCTTTATTAATAGTTTGTATGAGAgagcatgcatgcacacacacacagaaacagaataacGAACTGAAATATTCCCTGAGAAATTGTGGCTCTGGGTCTCTAGTTATACAATTGGAGCTGTAGTTGTGAActtatagtatagtacagtacagcatagTATAGTACAGTCTAGAATTGTAAATACAATATAGTGTAACCGTGTACTACAGCATATTGTAGTTCAATACGGTGTATTAGAGcacaatatattgtattcttGTATTGTATATTAGGGCAAAGTTGATAAACCTCTCTAGGGGAACAGACTGGGCAGtaaataatgacttttataTGCATcctaaataataatgatgtataaGAATCATTTAGTGGAACGTGCAACAATTACTATgcaataaaatcaatgcattttgtcTCCTATGACACCTTTTTAGTGCAATATGACACGTCTTGCTGCTGTATGACATTTTTTGGTTGTGCATGCATTTGGGTCATATATGAAATTTCTAAGTGATACTTTTGTGACTGACTGCCTGTGTGGCTTGTCCGCAAGTGTTATTATATGCATGTGACAACAGGATTATTATCTTCATCATCCTcatcattgttattataattaaaggaaataataatcgGTTGGGATAATCACTTACTCCTCCCACAGTACAGTGATTCTGCCTCATACAGCAGAGGTTGCTTGAGCTTTTGTATCCGATAGCATCCAAAAGCATAGATTTGTCACCAATTTAAAAGTCATTTGCCGAGCAGAAACCAGCCCACTCACAACACTGCATGTCCAAaaactgcattacattacagtgcGTTGAGAGCAGGTGTAATGAACTTGCGAGGCATTGTCCTTGCCCTCCTTCCCCCATCTCTTCAGTATGATGAGTTGCTAACCTACTTACATCACATACTCTCACTTATGCATGCTACTCCTTACCTAATTGTACTTCAGCTGCTGAAATGAACctacaaactatcactgatacTAACCAGCAAAATGCTATACAAAATAATCCATATTCGATAATATATTATGCAGGACAAAGTGTCTTCAGATAATTACATTctagttgttgttattattatgttcatCATACAAGGGATGAAGACGCAATTGTATACAACTAGaaacaatgtattataaaatggaATATTGATTGATGTTTGAATCTCACTATTCTGTAt

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000432 True 3781 mRNA 0.42 7 14567331 14572246

Neighbor

gene id symbol gene type direction distance location
AMCG00000431 LOC107732571 coding upstream 279 14548662 ~ 14567052 (+)
AMCG00000433 NA coding upstream 21874 14542257 ~ 14545457 (+)
AMCG00000419 NA coding upstream 209410 14355891 ~ 14357921 (+)
AMCG00000420 NA coding upstream 225168 14341500 ~ 14342163 (+)
AMCG00000416 LOC106608304 coding upstream 227284 14316161 ~ 14340047 (+)
AMCG00000429 NA coding downstream 478 14572724 ~ 14578029 (+)
AMCG00000430 NA coding downstream 7940 14580186 ~ 14585957 (+)
AMCG00000439 NA coding downstream 18554 14590800 ~ 14597614 (+)
AMCG00000437 fcf1,LOC106589732 coding downstream 180007 14752253 ~ 14755925 (+)
AMCG00000449 NA coding downstream 184888 14757134 ~ 14779964 (+)
G150303 NA non-coding upstream 102029 14464892 ~ 14465302 (+)
G150106 NA non-coding upstream 821215 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 917280 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 1154267 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1725658 12833539 ~ 12841673 (+)
G150364 NA non-coding downstream 160986 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 552464 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 565460 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 582389 15154635 ~ 15155084 (+)
G150459 NA non-coding downstream 587362 15159608 ~ 15160123 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 413491 14133138 ~ 14153840 (+)
G150069 NA other upstream 874742 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 1536478 12966877 ~ 13030853 (+)
G149859 NA other upstream 1839428 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 2572305 11965555 ~ 11995026 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 359532 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2239207 16811453 ~ 16814365 (+)
G150750 NA other downstream 2363747 16935993 ~ 16938282 (+)
G150811 NA other downstream 2973208 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 3176264 17748510 ~ 17759582 (+)

Expression


Co-expression Network