AMCG00000433


Basic Information

Item Value
gene id AMCG00000433
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14542257 ~ 14545457 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000433
tagttttgtttgttaactCCGCTTCATAGGCACGGTCGCACTAGTAGTTGGGAATGGAGAACCAGGTCGCTTTACTCGTCTGCTTGTCCCTGTTTTCCGTCGCGGTCTCCGAGCCTGTTAAATACATTGACTGTGgCTCCAAGGAAGGTAAAGTGATCATGGTTGAAGTAAGTCCTTGTCCAAAACAGCCTTGTGAGCTAAAAAAAGGAGAATCATATGCTGTGAATGTGACCTTCAGTAGCGCGGCTGATAGCGCAACGAGTAAAGCGGTTGTGCATGGAGTGATTGCTGGGGTTCCCGTCCCATACCCCATCCCCAATGACGATGGCTGCAAATCTGGAATAGTCTGCCCTATTCAGAAGCAGAAAACCTACAGCTATGTAAACCAGCTGCCTGTGAAGACTGAATACCCTTCAATCAAGTTGGTTGTGGAATGGGAGCTGAAAGATGAAAGTAGCATCGACCTGTTTTGTATCAAATTCCCAGTGCAAATCACCAGTTAATCGCAAGTGGGAGGCTTTCATCTCCAACCACTTTTCTGAAACGGATGTCTCAATGGTAAAAACGTGTAGACGTGGATCAGGCATGAGAATCGGCATTTATCTCATTGTTTaggctttttttcattttgattggttaattttaattgttcttgcgtcctacattttaatgtttttcatgaaACGCACAAAATTTAGTCTTTTAATTCtcacaataaaaatgtctgAGGTTTGTGGAATAAGATCCTTTTTATGGACAATTATTCAGAAAGTTGGAGTTTCTTTCTACAGTGAGTGTTGAAACCTCATTGCCTAAATGTTAACTAATCAATGATTTGCCTTCTCTAAAGACTCTAATGACAACAGGTTGTGTAAGTGATTGAACAGGTGAGATTACCTTAATCAAATTTCAAGATAAACcatgattttaaaagttgtttctAATGAGATGCActgaaattcagttttatacCTATCATCTAGAAAATGTAATCGACTTCATAAATTGTCTAATTTGTGCACCATATTTAAATTGCTGGCTGCTGTGTAGCCAGACTAGCAAATTTGCACGGGGAGATCATTTTGTCATTTCATTTGCCATATAACAACCTTAATGTGTTGGCCATCTGTTAAGTTCCAATCGGACACTGTCtgaattatatacagtattttttgtatatatattttttttgcctgGAATTTGCAATGactttttttatgatttttacgaatatgcatttattaaagaCAAATTGTTTGAATTGTTGTGGTGTGCCACTACATTTTACATTGACGTTTTCTAAAGACTGCACCTTTCTCAGTGTGCAGGGGTGCCACAGAACTTCAGaggatggaaaaaaatattctatttaCAGTAATGTAGGTACAacttgcaaatacattttatacccACTTGCTGCATTTTCAGGCTCATATATACATTGTAATTGAGCACACAGGGAGTTTTTCTTAGTCTGGCAAAGTGGGAAAGCATCTTtttagaacatttttattttttcatcacacagcggtttaaaaatgtatagttgGTCAAAGTACACCATCACTCAAGAGTTACTTGTATTCCTGTTCACTGGCTGCAAAAGCTAAGAGTATAAGTCAACTGGTGGCCAGGAAATTACTGCTATTAAAAagttcaaacaattaaacagttttaaatgaaaacaatgtagcTTAACTGTGCCACTGTAAACTGGTTGACTGCATTTAACGCTATAGTAACAACTTTAG

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005576 extracellular region cellular_component

KEGG:

id description
K13443 NPC2; Niemann-Pick C2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000433 True 1751 mRNA 0.38 5 14542257 14545457

Neighbor

gene id symbol gene type direction distance location
AMCG00000419 NA coding upstream 184336 14355891 ~ 14357921 (+)
AMCG00000420 NA coding upstream 200094 14341500 ~ 14342163 (+)
AMCG00000416 LOC106608304 coding upstream 202210 14316161 ~ 14340047 (+)
AMCG00000417 lin52,LOC107594798 coding upstream 253938 14286016 ~ 14288319 (+)
AMCG00000421 aldh6a1,LOC102788717,LOC107586880,LOC107664467,LOC107739234 coding upstream 259585 14261409 ~ 14282672 (+)
AMCG00000431 LOC107732571 coding downstream 3205 14548662 ~ 14567052 (+)
AMCG00000432 NA coding downstream 21874 14567331 ~ 14572246 (+)
AMCG00000429 NA coding downstream 27267 14572724 ~ 14578029 (+)
AMCG00000430 NA coding downstream 34729 14580186 ~ 14585957 (+)
AMCG00000439 NA coding downstream 45343 14590800 ~ 14597614 (+)
G150303 NA non-coding upstream 76955 14464892 ~ 14465302 (+)
G150106 NA non-coding upstream 796141 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 892206 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 1129193 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1700584 12833539 ~ 12841673 (+)
G150364 NA non-coding downstream 187775 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 579253 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 592249 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 609178 15154635 ~ 15155084 (+)
G150459 NA non-coding downstream 614151 15159608 ~ 15160123 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 388417 14133138 ~ 14153840 (+)
G150069 NA other upstream 849668 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 1511404 12966877 ~ 13030853 (+)
G149859 NA other upstream 1814354 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 2547231 11965555 ~ 11995026 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 386321 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2265996 16811453 ~ 16814365 (+)
G150750 NA other downstream 2390536 16935993 ~ 16938282 (+)
G150811 NA other downstream 2999997 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 3203053 17748510 ~ 17759582 (+)

Expression


Co-expression Network