AMCG00000439


Basic Information

Item Value
gene id AMCG00000439
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14590800 ~ 14597614 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000439
ATGGAAGAACAAGCTGGTGAAACCCTTGGGCAATGCAAACGCAATCCACTTACGTTGAGGAAACGAAAGCCTTGTGTTGACATGGGTGAGGGCAGTCATGGGATTCTCCGTCAGAAGAGTACAGTGATGGATGCAAGCACAGATCTCCAAAACTACTCATTGCACCCCACAGAAACGGCACATTTTAATGGGTCCAATGAACAAATCTGTGGTCCATCAAAGCGCAGGACCCATGCTGCTAGTGGTGGCAAACGGTGTGTGATTTACTCCTTTGTGCTGGTGATGCTGCTGTCCCTGTCCACCAGGTTTTATAAGATTCTGCAACCACCTCATATATGCTGGGATGAAACCCACTTTGGAAAAATGGGCAGCTACTACATCAACAGGACGTTCTTCTTTGATGTTCACCCACCTTTGGGGAAGATGCTGATTGGGTTGGCTGGATACCTGAGCGGCTATGATGGCACGTTCCCGTTCGTCAAACCTGGAGACAAATACGAAGAGCACAACTACTGGGGAATGAGAGGGTTTTGTGCGCTCCTTGGTTCATGTCTGGCTCCTTTCGCTTTCCTCATTGTGCTGGAGCTATCCCGGTCCCTCCCAGCAGCCCTCACTGCTGCTTCCATCCTCATCTTCGACACTGGCTGCATCACAATTTCCCAGTATATCTTGCTGGACCCGatcttaatgttttttataatgGGGGCAGTGCTGAGTACGGTCAAGTTCAACTCCCAGAGAGAGAGGCCTTTTAGCGCCCACTGGTGGCTGTGGCTGGTGTTTACCGGTGTCAGTCTTGCGGGGGCTCTGGGGGTGAAGTTCGTGGGGCTGTTCGTCATTCTGCTGGTCGGCCTGAACACCGTGCAGGACCTGTGGAGGCTGCTGGGAGATTTGAATCTGTCACTGGTGGTGTTTGGGAAGCACTTGCTGGCTCGAGTGCTGACTCTGATCCTGCTGCCTTTGTTCTTGTACATACTCGTTTTTGCGGTACACTTTGTAGTTTTAAAGAAGAGTGGTCCAGGAGATGGGTTTTTCAGCTCTGCGTTCCAGTCCCGACTGGTTGGGAACAATCTACACAACGCCTCCATGCCAGAGTATCTGGCGTATGGCTCCACCATCACCGTGAAGAACGTGCGGATCGCCGGCGGATACCTCCACTCTCACTGGCACCTGTATCCCGAGGGAGTGGGGTCTCGCCAGCAGCAGATCACTGCCTACTTGCACAAGGATTTCAACAACCTCTGGCTGGTCAGAAAGCAGAACAGCAGAGAAGAAGATCTGTCTGCACCGGCCGAGCTTGTCAGACACGGCGACATCATCAGACTGGAGCATAAAGAGACAACCCGTAACCTGCACAGCCACCTCCACGAGGCCCCGCTGACCAAGAAACACCTGCAGGTCACCGGCTACGGGATCaACGGCACGGGAGACCCCAACGATTTCTGGCAGGTGGAGGTGTGCGGGGGGAAGCCGGGTGACCTGGTCAAAGTGCTGAGGAGCAAAGTGCGTTTCATCCACCTCTCCACCGGCTGCGTGCTCTACTCCTCGGGGAAGACCCTGCCAAAGTGGGGATGGGAACAGGTGGAGGTGACGTGCAGTCCTTACCTGAAGGAATCTCCCAACTCCCAGTGGAACATCGAAGATCATGTCAATCCCAAATTGCCTAATATAAGCCTGGCGGTGCTCAAACCCTCCTTCTTGGAAATTCTTGTGGAGTCCCACATCGTCATGATCAGGgGTAACAGTGGCCTGAAACCGAAAGATAACGAAGCGAATTCTAAACCTTGGCACTGGCCTATCAACTACCAGGGTCTGCGTTTCTCTGGTGTGAATGAGACCGAATACCGCGTTTATCTGCTGGGAAACCCtGTCATCTGGTGGTTGAACCTGTTCAGTATTGGCCTCTACGCGGTCATGGTCTCCATTGGGGGTGTCGCAGTCCAGCGGGGGGCACAGCTGGGGGAGAGAGCTCGAGAGCGCTTCCGCACACTGAAGGAAGGGGGCGGGCTGCTGATTCTGGGCTGGCTGCTCCACTACCTCCCTTTCTTCACCATGGGCCGGATCCTGTACTACCACCACTACTTCCCTGCCATGCTGTTCAGCAGTATGATCACAGGGCTGACCTGGGACAGCCTGCTGCGGAGCGGAGACTTGCTGCTGAGCCCCCCCATGGCTCGGACAGTTCACCTGGGGGGCCTGGCTGCGCTCTCCTTCGCCTCCCTCTACAGCTTCTACCTCTTTCACCCCCTGTCCTACGGCATGACTGGCCCCCTGGCCCACGACGCCGGCAGCCCCATGGCAGGCCTCAAGTGGATGGAATCATGGGAGTTTTAG

Function

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0016020 membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function

KEGG:

id description
K00728 POMT, pmt; dolichyl-phosphate-mannose-protein mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000439 True 2334 mRNA 0.55 21 14590800 14597614

Neighbor

gene id symbol gene type direction distance location
AMCG00000430 NA coding upstream 4843 14580186 ~ 14585957 (+)
AMCG00000429 NA coding upstream 12771 14572724 ~ 14578029 (+)
AMCG00000432 NA coding upstream 18554 14567331 ~ 14572246 (+)
AMCG00000431 LOC107732571 coding upstream 23748 14548662 ~ 14567052 (+)
AMCG00000433 NA coding upstream 45343 14542257 ~ 14545457 (+)
AMCG00000437 fcf1,LOC106589732 coding downstream 154639 14752253 ~ 14755925 (+)
AMCG00000449 NA coding downstream 159520 14757134 ~ 14779964 (+)
AMCG00000447 dlst,LOC107092408,LOC105916992 coding downstream 202111 14799725 ~ 14809276 (+)
AMCG00000448 NA coding downstream 274818 14872432 ~ 14879117 (+)
AMCG00000456 tgfb3,LOC106590795 coding downstream 513231 15110845 ~ 15123601 (+)
G150303 NA non-coding upstream 125498 14464892 ~ 14465302 (+)
G150106 NA non-coding upstream 844684 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 940749 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 1177736 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1749127 12833539 ~ 12841673 (+)
G150364 NA non-coding downstream 135618 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 527096 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 540092 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 557021 15154635 ~ 15155084 (+)
G150459 NA non-coding downstream 561994 15159608 ~ 15160123 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 436960 14133138 ~ 14153840 (+)
G150069 NA other upstream 898211 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 1559947 12966877 ~ 13030853 (+)
G149859 NA other upstream 1862897 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 2595774 11965555 ~ 11995026 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 334164 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2213839 16811453 ~ 16814365 (+)
G150750 NA other downstream 2338379 16935993 ~ 16938282 (+)
G150811 NA other downstream 2947840 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 3150896 17748510 ~ 17759582 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location