AMCG00000456 (tgfb3,LOC106590795)


Basic Information

Item Value
gene id AMCG00000456
gene name tgfb3,LOC106590795
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15110845 ~ 15123601 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000456
GATGGGAGAGCACAGAAAGCCGGCACCAGCTGAgagaaagtaaatatatataccaggGAAACTGGATCCAAAGCTGttgagagggggggggggaaactgaTTGCgcaaggagaggaaaaaagagaTTTAAGATGTCAGTGCTTCTGATGAAAGGCAGAGCAGAGCAAAAGGAAAGTTGAATGAAGCACTGCTGAAGTATGATATGCAACCTTATTGATGGGATAAAGACACGGATTGCGCTCATGACCGGCCGCTCACTGTAACCTATGCCTGCACAATATGGGATCTTATGGGGAAATGGTCCACTGAGCACTTGAATgagaaggagaaagaagaagaggagatTCAACCAAGCTCTAAATGCCAACCCTCTCCCAATTAAGCTTATGCATCTATTAGATATCAGTGCTGGCAAGAACCCAGTCCTCTGATTGACTCACTTTTGCGTATTTAAATCCAACAAACCAGCAGCCATGTATCTGGGGAAAGCCCTTCTGTTTTTCCTGCTTTTGAACTTCGTGACCATGAGTTTGTCCCTCTCCACTTGCACCACGGTGGACATCAACCACATCAAGAAGAAGAGGGTCCAGGCGATCCGGGGGCAGATCCTCAGTAAGCTGAGATTGACCAGCCTGCCGCCGGCCGCGGGTCCCAGCCAGGTGCCCATGCAGGTGCTGGCTCTGTACAACAGCACCAaggagctgctggaggagaTGGGCAGGGAAAGGGCGCACCAGAGCTGCGGCCAGGACAACACGGAGACCGAGTACTATGCCAAAGAGATATACAAATTCAACATGATCCATGGGCCCTCGGAAAACAATGACCTCCAGTACTGCCCCAAGGGGATTACCTCCAAGGTGTTTCGTTTCAACGTGTCAATCATGGAGAAGAACGCCTCCAACCTCTTCAGGGCCGAGTTCAGGGCCCTCCGCGTGCCCAACCCCCACGCCAAGAGGAACGAGCAACGGATCGAACTCTACCAGATACTGAAGCCTGATGAACACATAGCCAAGCAGCGCTACATCGGAGCGAAAAACATCCTGACAAACGACGAGCCGAAGTGGATCTCGTTCGATGTCACGCAGACTGTGAAGGAGTGGCTAATGTACAGAGAGACCAACTTGGGCTTGGAGATCAGCGTGCACTGCCCCTGCCACACCTTCGGCCCCAACGGCGTCATCATCGATAATGTCAACGAGGTGCTGGAGGTCAAGTTCAAAGGAGTGGAGAGCGACTACGAGGAGCAGATCCGTCTGGACACCAGCCGTCTGAAGAAACCGAAGGAGGAGCTCCCCCACCTCATCCTCATGATGCTGCCCCCCCATCGTCTGGAAGACAGAGTCGTATCGCACCGCCGCAAACGGGCCCTGGACACCAACTACTGCTTCAGCAATTATGAAGAAAACTGTTGTGTGCGTCGCCTATACATTGACTTCCGCCAGGATCTGGGCTGGAAGTGGATCCACCACCCCAAGGGCTACTATGCCAACTTCTGCTCAGGGCCCTGTCCTTACCTTGGGAGCTCCGACACCACTCACAGCCAGGTGCTGTCCCAGTACAAAATCTTGAACCCGGACgcctctgcctctccctgcTGCGTTCCTCAGGACCTGGAGCCCCTCACCATCCTCTATTATGTAGGACGGACTCCTAAAGTGGAGCATCTCTCCAACATGATTGTCAAATCCTGCAAGTGCAGCTGAAACCACCGTGTCCACAAAGTGCAATTCTGCAGGAGTGTCCACTTGAGCTGCCTGCCATCCCCCTTCCAAAAGAATACCTCTTTACCgagagccagccagccagctcaGCGACAAGCCACAGGACCTGTCTGAGGGAGACGAATGGCTGGCTGATCTGCTAAAGACATAACGTGCCTCGAAAACTCAACTTTAAACATACAGTGACGTCTTTGTCCACATCCATGGACCTATAGTGACAGTTTTTCagctttgaagtgttttttcaGCATTCTGAACTGGCTTTTTCCTTCTGACACCTGAGCATTTCAGACACATTTCCTTAAAGAATACAGACAAAAGGTTTCTTAAAAAGTGTCCTTCAATGAGAGCTGCTCGTACAAGAACTTGAGAACATAGCTGCAGCTGAAAATGAAGACTCTGAAATTGCCTGCTGGattaaaagacaaagaaaggGTAAAACAATGCACTGTTTTAGCCAAAGCTGCAGTAAGCAATATTTTTGGGAATGCCAACTTAAAGCCTTGATGTACCACAATGAGTACAAAGGGATATTCATGCTGGAAATCTGCGCTGTGCGCATCTCAGTACCCTACACTGTTTATTTAGGAGAGATACTGATGGATTGCAAATAGtcttaggagaaaaaaaacatgctggaAAATAACGATGTCTGAAACCAGAATTATTGTCATCATTGCGTTTACCTCTGTTCTGCAATAGAAGAACTTATTTTTTGGGACATTTTTGTTCATAAACAGAAGTGGATATTTTCTGTTGTACAAACAATTGATGTCACTTGGTGAACATTTCACAAAATCACAAActgttcatgttttaaatattactcgtgaaaacactttttatattaaaaaatggtcTTGGACACA

Function

symbol description
tgfb3 Predicted to enable cytokine activity; type II transforming growth factor beta receptor binding activity; and type III transforming growth factor beta receptor binding activity. Acts upstream of or within hematopoietic stem cell differentiation; regulation of cartilage development; and regulation of ossification. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cardiovascular system; fin; head; immature eye; and nervous system. Human ortholog(s) of this gene implicated in Loeys-Dietz syndrome 5; arrhythmogenic right ventricular cardiomyopathy; and arrhythmogenic right ventricular dysplasia 1. Orthologous to human TGFB3 (transforming growth factor beta 3).

NR:

description
PREDICTED: transforming growth factor beta-3

GO: NA

KEGG:

id description
K13377 TGFB3; transforming growth factor beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000456 True 2593 mRNA 0.48 7 15110845 15123601

Neighbor

gene id symbol gene type direction distance location
AMCG00000448 NA coding upstream 231728 14872432 ~ 14879117 (+)
AMCG00000447 dlst,LOC107092408,LOC105916992 coding upstream 301569 14799725 ~ 14809276 (+)
AMCG00000449 NA coding upstream 330881 14757134 ~ 14779964 (+)
AMCG00000437 fcf1,LOC106589732 coding upstream 354920 14752253 ~ 14755925 (+)
AMCG00000439 NA coding upstream 513231 14590800 ~ 14597614 (+)
AMCG00000461 clg15h14orf1,LOC106591002,LOC107724257,LOC104921354,LOC107554785,LOC102222511 coding downstream 61846 15185447 ~ 15187339 (+)
AMCG00000468 NA coding downstream 137490 15261091 ~ 15262791 (+)
AMCG00000460 tmed10,LOC106608292 coding downstream 147854 15271455 ~ 15276495 (+)
AMCG00000462 eif2b2 coding downstream 154855 15278456 ~ 15281462 (+)
AMCG00000473 NA coding downstream 168714 15292315 ~ 15294469 (+)
G150364 NA non-coding upstream 377405 14733232 ~ 14733440 (+)
G150303 NA non-coding upstream 645543 14464892 ~ 14465302 (+)
G150106 NA non-coding upstream 1364729 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 1460794 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 1697781 13412865 ~ 13413064 (+)
G150455 NA non-coding downstream 1109 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 14105 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 31034 15154635 ~ 15155084 (+)
G150459 NA non-coding downstream 36007 15159608 ~ 15160123 (+)
G150460 NA non-coding downstream 36856 15160457 ~ 15160677 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 166445 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 957005 14133138 ~ 14153840 (+)
G150069 NA other upstream 1418256 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 2079992 12966877 ~ 13030853 (+)
G149859 NA other upstream 2382942 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 1687852 16811453 ~ 16814365 (+)
G150750 NA other downstream 1812392 16935993 ~ 16938282 (+)
G150811 NA other downstream 2421853 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 2624909 17748510 ~ 17759582 (+)
G150976 NA other downstream 3030263 18153864 ~ 18159321 (+)

Expression


Co-expression Network