AMCG00000470


Basic Information

Item Value
gene id AMCG00000470
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15620646 ~ 15641297 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000470
CACGGAGTTGTGAAGAAACGCGCCAGGACGTTATTTTCGGTTTGGGAGACGTCAGAAATCCAGCACATTCTCCATGTCCAGGTAATGCTCCATCCTTTGCCATGACCCAGCAGGAACAAAATGAGTTTGGGGAGAGTCTGGAGAGCGCCCAGGCCTGGATGCAGGCTGTCCAGGAGAAGCTGAAGGTTAATGATAATACGCAGGGCCCCAGGACAGCTCTAGAGGCCAGGCTTCGAGAAACCGAGAGCATATATGAGTCCGAGCCTGAAGGTAGGATGAAGATGGACGTGGTGCTGGTGGCAGCAGAGGCTCTTCTGCAGAGCGGTGATGAAGGGACGAAACAAGAGACTCTCACCAAGCTGAAACGGGTCAAAGACCTCTGGGAGGAGACATCCACATACATCGTTCACTGTCACAGCCGTATCGAGTGGGTGTGGCTGCACTGGAGTGAGTATCTCAAGGCCTACGAGGAGTTTGAGATATGGCTGCGAAAGATGCGCCTGGCCCTGGAGCCCGATCTGGAGTTGCAGCTGGGAGTGAAAGAGAAACTCTGGCAGCTGGATCACCACCGTGTCCTCCTGAGTGATGTCCACAACCAGAACGTCTTTTTGGGTCGGCTGGTCGATGAAGCAGCCTCCCTGTACAGCCGCACCGAGGACCCCAGCGTAGGAGAGCAGGTGCAAGAAAACCTGAAGACAACATACCAGGAGATCAGTGTTAAAGCTCAGGAAAGAGTGACTTTACTCCAAAAAGTAGCTGAGGAGCATCAGCTTTACCAAAGTCACAGAAACGAATTCTACGCTTGGCTTTACTCCAAGGCTGAAGAACTCAACTGCTGTCATGAAATTGAAGACACAGAAGATAAACTCAAAACACTACAGgaaTTTTACGAAAGTGTTAACAGTGAGGAGAAAACGTTACAGCACATAGACGGGCTGGCTGAGACAGTGAAGGCCAGCACTTCTCCTCTGGGTGCTGAGAAGATTGCTGAGGACGTGGAGCAGCTGAGACGGACCTGGGAGAGTCTGAGACAAAGGTGTACCCAGGACCAGGGGACTGTGTGGGACAGGCTGAACTCAAAGACCGAATTCACAGCCAGGGCTGGACAGCTCAGAAGCGACATTACAAAACTCAGGAAACTGCTGCAGAAACTTAACGGAGAACTGGAAATCAAAGATGGCGAAAGAAACGAGGAGCAAATGCTGGCTATGTGGAAGAAATATACGAGCACCAGAATGACCCTGGCAACTGAGGAGTCCTGTGTTGAGAGGCTAAAGGCCCAGCTGAAGGAACTGTTTAAGTTTTCCCAAGATGCCAAACCCCTGTCTGAAGAGGTAGTAGCAGTGGAGAAAGAATATAAGAGtgtgaAAGGCAGGGCATTTAGGTTGTCAACAGAGACGGAGGCCGGTCTGAGGCAGGTTCTTCAGGATCCGCTCCGAGAGTTCAATCACTGGAAACTGATGGCTTCCAAGATTTTAGACTCGTCCTCAGAAGACACTGAATTTTGTGTCCTCAGTTTGCAACTGCAGAGTATTGAGAAGTTGCTGTTGCAAAGCTCCCAGCTACAGGAGAGGCTGAGTCACTTGCATGTCAAGCAGGACTTGCTGAGCAGTGTCTTCGGCGAGGAGAAGGCCGAGAGCCTGCGATCTGACCTCACTGCTGCAATCTCACAGAGGGAACTCCTGCACGGCAAACTCGTGCAGAGAAAGAATCAACTGCAGGGTATAATCTCAAGAACAAAAGACTTTGATAATGCTTATGAGCCCATCCTGAGAAGGCTAGCTGACATCAGAAGAAGGCTTGCTGCCCTAGATGTCCTGCAGCCTGACATACTGGCCAAGAAAAGCAAAAGTGACCACTTACGGGTAATCCAGAAGGAAATGGACGAATGTGAGGCGCACATCGAAGCAGTCGGGACTTTGGTTTCCCCAAACCCTGACGACAAGAATAAATTCAGTCAGTTGAAGGCTGAGTGGaaatctctctctatatctTTGAAGggaATTCTTTGGGCAAATGACCAAAATATCGCTGAACATGAGCATTTCCGTGAGAGTATACTAAACCTGGAGAAGTGGTTGATGATAACCAAGCAGAAACTGGAGTCGTACTGTAACGCCAAAGGGGAGTGGAGTATTGAGAACCGCCAAGCTGAGGCCAAGAAAGTACTCACTGAGTTCCCTGCGAAAGAGATTCAACTCCACCACACTGAGGCCCAAGGGCAGATGGTCCTGGCAAAAACCTCTCCCGAGGGCCAAGTGCACATCCTCAGGGACCTGGAGCGTCTGAAGGAATCATGGGATTTCCTCCCAACACTGAGTGTGAATCTCACCAGATTAATTGCTCATTACAGAGCCAGTGAAAATGAAGGTTTCTTGATGGAAGAGGATTTGAGAGGCGAAGAGTACAGAAGTAAAGCGATCAGCGGGAGTTTTGCAGGAGTGGAAACAACTTACAAGTCCACGCAAGAGAGGACTGTTCAAGGATCTGCCGATTATACGGAGGGACCCAGAGGAGGAAATGAGTTTCGTGTTGCTGGATGGCACACTGCGAAAACGGGCAAGGTTGTTGAACAGAACGATAATGATGACGGCGCCAATCGCCAGCGAGGAAGTGACCTCGGGGATGGACGGGAGGTCACATTTCGACATATTGGAAGTGAAGAAGATCGTGAATGGAGAGGTGACCCGACGTCTGCACCCAACTGCACACAGTTTAAAGCTGGTCTTTCTGGTAACAGAAGTAAAAGGAAGCACATTATCGGTGTTCATGGAATTAATGAACAATGGACTGGTGAAGGTGGCACTTATAGAGAAAGTCCAGGCAGGGCGACAGGGTCTTGGGTACGAGTGACCACTGTGATTGAGGATCTGTCGAAACATAAAGGCCAGGACTCTGTGGATGGACCCAGTCAAGACAGAACGGTGGGCTCAAAAGAAACCCAATCTCCTGGGGACTTTTATAAGCTTCAAAAAGAGTTTGAAGAATGGTTTCATGGAGAAAACGGTAAACTAGACAAGATATTAAGTCGAAAAGGATATTTGAGCATGAAAGAGCTGAAAATCCGTCAACAAGGACTGAAGGATTTGCGTTCTCGTGTCAGCTGGGGTCAGAGTTGCTTCCAGCGTCTACTGAAGTCCACAGGCGGTGTAAGGGCAGAGAACATTGGTCTGGAGGAATTACGTTATCGCTGGATGCTCTACAAATCTAAACTGAAAGAAGTTGGCGATCTAAAGGGACTTGTGAGACCCAAGGTTGTTGGTGCTCTTAATGAACCCATCAGGACTGAAAAGACGCGTTCACGGTTTCTGTACCGCGTGTGCTGTGCTGCCCTGCCCCTTCAGCTCCTCTTACTCGGCCTCCTTCTCTTGGCCTTCCTGCTGCCCCTGGTAGACGAAGGTGCCAGCTGCTCCCTGACCAACAACTTTGCCCGCTCTTTCAACCTGATGCTGAGATACGAAGGGCCACCGCCAACCTAAAGGATTGAAGTAAAGCTCTATCTCAATGCACTATTTAAGCTAAAACAGCAAGTCAAAGCGTCacaaaaaatattgtgttttttaactgGAGGACTCCTGCTCAACAAAACGTCCAAATCACGCGTCAGCAGCACATAAAGTGAATATGCTACCTACACAATATCTAAATGTATCAATATCTGCCATTAAATCACCCTGGTGATGTACTGCAGTTTGACAGGTGTGTCCAGACTGCAgcataactttattttttattttttgctaagCATTTTAGCGATCATTCTTGACATTCTGTggtaaaaataagaaatcaaagGCAAGTTAAGAGAATGCATGAAGTATATTtctcaaatacaaacaaaaactgaaaaaattgtGTAATCAGAAGTTGAGCTATAGGCAGTATAGTGTGTCTAACTCTGCTGTTTCTTTTGTCCTTGTAAATAATACCACCTATATGCACTTGAATTATTATATTcgtattataatatattattttgcatacgcatacaatatttttaaacagttaaatgATTTATGAAGTATACATTAACTAAGAATATGCTCTAATTGTGAACGCTAAGTAGTTAGAGTGAGCTACAGTCCCAAAGAATATTCTTCTGTCTACAAAAATCATTGtaaattgtagtttttattttgttaatcatgtGATTCCTGTAAGACTAACTCCAACAAATAATTATGCAAAGATAATTTTGTGGCAATGTGGAAAATACTTATAACCTCTTCCCAAGTTTGCTGTTCTAGGTAACATCAGTATAAATACCTGATAATAGTTAGTGTTATTGGCTTCATTTTAGTAGAGATTTTGGCATTTTGTAGATTTGcttgtattttacaatttcacAACTATGTTATCATGACGTCCAGATAAAATTACATGTACTGGTTTGTCAATATTGTTACCTAAAgtattcattttactttttcttatcCACTGTTTCAAAACCTTAATCATTAATTTCCCTACAGCAACTTGGCTGCTTGTCATACTCTTGGATTAtgttgtaaaatactttttttttttttttaaacctaaccGCTTAATGTTTTGGAAGGTTTAGataagtatattaaaaatgccCCTTACATAAAATGCCCTTTTTTGACCAAAACTCCAACTTCTGTGTGGCCTTTCGACCTTTTGTATTGCGGATTCTTACCCagcatgttttaatattaactAAAGTAACTTTTCAGGGCTGGATTTCACCcgggaaaagaaaatgtaatgtcattAGATTTTCAATgccagtattttttattttttattttttttttgttctaggATTTTGGACCTTTTAAATAGGGTCTGAGGAATacatgttcaaaataattattctaaaaTTAGTTGGTTGCTTGAGAATACAAATGTGGGGAAAAATGTTGTACAATATCTTGCATGGCCTTAAGACTTGTTTTTATAAGGAAATTGAGAGTATTGCAGGAAACTGTATTTTCAACATCAAACCTCAGTGTAGAATATTCTTCCCTGTAGCTCTTGCCTTTGTCAATTATTGAATGGCTTATCCCAGGGGTTCCCAACATTATTGAGCGAATGTCCCCCTACTTTTTAAGCTATATTCTCTGAGGTCCAGTCACATACGTATTACACTTTATTACTATGAAGGTCATATTATTGAGGTCTGCAAAATATGGCCTCTGGGTCCAGATTGGGACCACAGTCCGCCAGTTGGGAACCCCTGGCTTAAATGAACATCATGCCTTgttcacatatttatttgttattttattcttcatcaGTTTCTTTACTAtagttgtataataataatagcaaaagCTTGTTATAAGATTTAATATCGCACAGCTATCCAAAACATACGTTGCTTCATATTATTGCACTGACATCATGTTTATGTGAGATGCTAAACTGAATAATTTTGGTTATCcttgtataatattgtataactGGCACTGCCTTTTGATGTTTGCATAAAACAGTCACTTTTTAATAAGCATTTGGAGTTTGGCATAGCAAATATTCCTTTCTGAGGAATTTCAGATTCTTGATACATGAAACGCATGTATTGGAAAGGACTGACAATAGGGACTTGTGTTCTCCATAATATCAACATATACTGCAATTACACGCACATGCAAGGTGTTTcaggaattaattattttgtaaaatacaattattatattttatcagttacatacagaaaaataagtgagatactgttttgaaaatgtataaccaGAACTTATTTTGAACTAGTATTTTTGTATGCTTGtcataaacacaataaatatgcaatatgtgtgtataaattgTCTGTCTCTagtataatgtttattttggcaCAACAAGCTTATGAATATTTGCTTATGGCTTCATGATGTCAGTCACGTTAAATGGAGATACCGTATCTCTACTATGTTTGTTTACAATGTTAGTCAATGCATTTAAACTcggg

Function

GO: NA

KEGG:

id description
K21761 SYNE3; nesprin-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000470 True 5938 mRNA 0.42 18 15620646 15641297

Neighbor

gene id symbol gene type direction distance location
AMCG00000478 NA coding upstream 178359 15426545 ~ 15442287 (+)
AMCG00000474 eml5 coding upstream 236645 15352977 ~ 15384001 (+)
AMCG00000473 NA coding upstream 326177 15292315 ~ 15294469 (+)
AMCG00000462 eif2b2 coding upstream 339184 15278456 ~ 15281462 (+)
AMCG00000460 tmed10,LOC106608292 coding upstream 344151 15271455 ~ 15276495 (+)
AMCG00000471 NA coding downstream 8994 15650291 ~ 15669353 (+)
AMCG00000484 dicer1,LOC107552827,LOC107668604,LOC107671118 coding downstream 37405 15678702 ~ 15694287 (+)
AMCG00000485 gsc,LOC101076325,LOC102791948,LOC103364184 coding downstream 93499 15734796 ~ 15736604 (+)
AMCG00000489 NA coding downstream 111128 15752425 ~ 15758447 (+)
AMCG00000483 NA coding downstream 382586 16023883 ~ 16029161 (+)
G150563 NA non-coding upstream 1620 15615130 ~ 15619026 (+)
G150506 NA non-coding upstream 320768 15295607 ~ 15299878 (+)
G150484 NA non-coding upstream 369917 15250517 ~ 15250729 (+)
G150475 NA non-coding upstream 391384 15228957 ~ 15229262 (+)
G150460 NA non-coding upstream 459969 15160457 ~ 15160677 (+)
G150642 NA non-coding downstream 549523 16190820 ~ 16191021 (+)
G150686 NA non-coding downstream 1003831 16645128 ~ 16646915 (+)
G150687 NA non-coding downstream 1006608 16647905 ~ 16649574 (+)
G150689 NA non-coding downstream 1040618 16681915 ~ 16722627 (+)
G150767 NA non-coding downstream 1555180 17196477 ~ 17501853 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 676246 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 1466806 14133138 ~ 14153840 (+)
G150069 NA other upstream 1928057 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 2589793 12966877 ~ 13030853 (+)
G149859 NA other upstream 2892743 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 1170156 16811453 ~ 16814365 (+)
G150750 NA other downstream 1294696 16935993 ~ 16938282 (+)
G150811 NA other downstream 1904157 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 2107213 17748510 ~ 17759582 (+)
G150976 NA other downstream 2512567 18153864 ~ 18159321 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000032_00612202_00639442 NA coding CI01000032 null 612105 ~ 639442 (-)