AMCG00000486 (vrk1)


Basic Information

Item Value
gene id AMCG00000486
gene name vrk1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16280906 ~ 16291497 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000486
CTGCATAGGGACCCTGCTGGGAGAACAGTGCGGGAATTTCGGAGAGTGGGCATCGCTAAAGGGAAATAGCAAGACTAGAGAGGCACATTGCGCCAGAGAGTTTCTATTTGGTATATAACAAGATGCCTCCAAAAAGCAAGGCACCCGCTAAAGGCAAAGGCCCTGCAAAGAGAAAGCTAGCAGAGCAGTTTCCTCCAGGGGAGATACTGACAGACACCGGGAAGAAGCAGTGGAAGCTGGGAGCCCCCATTGGACAAGGGGGCTTTGGGGTGCTTTATTTGGCAAACGAAAGTGCATCCAAAACAGTTGGCAATGATGCACCTTATGTCATAAAAGTGgaacCGAGCGACAACGGACCACTGTTCTCTGAGCTGAAGTTCTACATGAGGGCTGCTAAACCAGATCTAATTCAGAGCTGGACCAAGTCACACAAGCTGAAGTACTTAGGAGTGCCAAAGTACTGGGGATCAGGTCTGCATGAGAAAGGAGGAAAGAGGTACAGGTTCATGGTAATGGACAGATTTGGTTCGGATctgcagaaaatgtttgaagaaAATGGGAAGCGCTTTCCCCGAAAAACAGTTCTGCAGCTCGGGCTGAGACTaCTTGACATTCTCGAATATATCCACGAACACGAGTACGTGCATGCCGACATCAAAGCCTCTAATCTTCTCCTTAGTCACAAGAATCCCAATCAGGTTTACTTAGTAGATTATGGACTGGCCTATAGGTACTCTCCAGAGGGTGTAATGAAGGACTACAAAGAAGATCCAAAGAGATGCCATGATGGGACCATTGAGTTTACCAGCATTGATGCACACAAGGGAGTATCTCCATCTCGACGAGGAGACTTGGAGATCCTGTGGTACTGTATGGTCCAGTGGCTGTGTGGATGCTTGCCATGGGAAGACAAACTCCAAGACCCCAACTATGTCAGAGATTCAAAGATCAAGTGCAGGGAGAACATCTCGGATTGTTTGTCCAAGTGTTTCTCTTCTAATGATAAGCCAGAGGAACTGGTGAAGTTCATGGAAGAAGTGAAGCCCCTGTCGTACGATGACAAGCCGCCCTATCAGAAGCTGCGAACCATTCTCCAGGCGGGACTGAAATCCATTGGTGCTGCCGACGATGACAAACTGGACTTCTCCCAGCCATTGAATGGAGCCGCTGCATCACCAGTGAAGAAGACCACCAAAAGAAAGAAGGTGGAGCAAAGAGTCAATtctgatgaggaggaggaggaagaggaggacgtTGTTCCcgcaaagaaaaagacaagttCCCCGGCGAAAAAAGGTGTAAATGGCTTGAAAAAAAAGGCTGCTCCCAAAAAGAAGCTGGTGGACACGAGCACCCAGACGTCCCCGCACACGGCGCCGGCAAGAGGGCGAGGGCGGCCCAAGAAGACCGCCTGAGGGCAGATACTTTCATTTCCTGACCTTGATGCCTTGTTAcaattttttgtctttttatgctTGATTGATCCACTTTGCTTCACCCCTTAGGAAATATTGTTTAgaattgggggtggggggtctttTTTGTGttctgatgtgttgtttttaaaaacttaaacctttcttaaataaatactggGAAACATTGATCATACTTGTTCATTTCATATCATGCAAACTATCAAGagatagaaacaaaaatatatcagcCTAAGGGTCATAGGTTTAGTGACACAGAAGTGCAAGCAAAGGGACATTTTTACTGAAGATGTTCACTGTATTactgcctttttgttttgcatgaaaGCAGTCATGAATTCTTATTTCCTCGTGTCTCAGAGATGCAAGCCGGTCCTTTGATACCGGTGTTGAAGCAGGCGAGTGTAGTGCACAGGGtctgttttgtggtttgttgCTGCTTCCCACTATTTGATCAAAAGTAGACAATGGGATGCTTGCCGTTTTCCTTTCATACTATTCAAATGATTTGTACCTGGATCTTCACCCACTGCTTTCTGTGTTTCctcttttgaaataaatgtcaaaacatcATTAAAAACCAAAGACAATGCAGTGACATGTGTAATGAGATGCTACCTACATTTTAATACTGTGACTTCATACATTAACcttagattattattaaaaaaaaaaaaaaacagatctttGCCACACCGTACTAATAAAATagagtaaaaacattttactttcaaccctttattttcattgtcagCTAAACAGTTGCTTTCTCGTGTTCACAGAGATTCCAGTGATCTGAATCTATCTTGGCGGATTCCAGTTTGCCTGCGCGTTTGACACTGCATTGAACTACCCCGACAGCTCGTGCCAAATTCTTCTGTGTTTGCAGATTCCATCCAccgaaaaataattaaaaccgaTGTGCAGAACTGAAATTAACTGACATAATTTGTAAAAGCATTAGGAATTATAACGGTTTGTCAAATTTCCACATCTGAATCTGACATTGCAATATCCAGggtcataataaaaatatatatatatatatatataaatcttaaGAGA

Function

symbol description
vrk1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in Golgi disassembly and peptidyl-serine phosphorylation. Predicted to act upstream of or within cell division and protein phosphorylation. Predicted to be located in Golgi stack. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 1A. Orthologous to human VRK1 (VRK serine/threonine kinase 1).

NR:

description
Serine/threonine-protein kinase VRK1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08816 VRK; vaccinia related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000486 True 2501 mRNA 0.43 13 16280906 16291497

Neighbor

gene id symbol gene type direction distance location
AMCG00000490 papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 48475 16216282 ~ 16232431 (+)
AMCG00000492 NA coding upstream 65435 16208705 ~ 16215471 (+)
AMCG00000491 galc,LOC107372531 coding upstream 72630 16198281 ~ 16208276 (+)
AMCG00000483 NA coding upstream 251745 16023883 ~ 16029161 (+)
AMCG00000489 NA coding upstream 522459 15752425 ~ 15758447 (+)
AMCG00000495 ccnk,LOC107560198,LOC107678663 coding downstream 449187 16740684 ~ 16745744 (+)
AMCG00000512 NA coding downstream 504596 16796093 ~ 16801794 (+)
AMCG00000513 NA coding downstream 523346 16814843 ~ 16849247 (+)
AMCG00000502 NA coding downstream 652563 16944060 ~ 16944477 (+)
AMCG00000498 adck1 coding downstream 714972 17006469 ~ 17051834 (+)
G150642 NA non-coding upstream 89885 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 661880 15615130 ~ 15619026 (+)
G150506 NA non-coding upstream 981028 15295607 ~ 15299878 (+)
G150484 NA non-coding upstream 1030177 15250517 ~ 15250729 (+)
G150475 NA non-coding upstream 1051644 15228957 ~ 15229262 (+)
G150686 NA non-coding downstream 353631 16645128 ~ 16646915 (+)
G150687 NA non-coding downstream 356408 16647905 ~ 16649574 (+)
G150689 NA non-coding downstream 390418 16681915 ~ 16722627 (+)
G150767 NA non-coding downstream 904980 17196477 ~ 17501853 (+)
G150831 NA non-coding downstream 1364079 17655576 ~ 17702341 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 1336506 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 2127066 14133138 ~ 14153840 (+)
G150069 NA other upstream 2588317 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 3250053 12966877 ~ 13030853 (+)
G149859 NA other upstream 3553003 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 519956 16811453 ~ 16814365 (+)
G150750 NA other downstream 644496 16935993 ~ 16938282 (+)
G150811 NA other downstream 1253957 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 1457013 17748510 ~ 17759582 (+)
G150976 NA other downstream 1862367 18153864 ~ 18159321 (+)

Expression


Co-expression Network