AMCG00000490 (papola,LOC107560206,LOC107747941,LOC107678672)


Basic Information

Item Value
gene id AMCG00000490
gene name papola,LOC107560206,LOC107747941,LOC107678672
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16216282 ~ 16232431 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000490
CTAGAAGGTTGCTGTGGTAGCGCGCAGCGCCATGTTGAGACGTATGAGAAGAAACGATAACAATAATCCTAAACCGACGATAAAATACAGCGTACAGTAAAAGTACAAAACCAGATGTAATGAAAAgggcatttgtgtgtttttaacataCTCGTTGGAGATAACATGCCTTTtcCTGTTCCAAATCAAGTAGTGCAAGCATCCCAGCAACAGCCGAAGCACTATGGCATCACCTCTCCCATCAGTCTCGCCCTCCCCAAGGAGGCTGATATTGTTCTCACTCACAAGCTGACTGAGGCACTGAAACCCTATGGGGTTTTTGAGGAAGAGTTGGAACTGCAGCGCagAATCTTAGTCTTGGGCAAATTAAACACACTGGTTAAAGAGTGGATCAGAGACATCAGTGAAACTAAGaATTTGCCGCCATctataattgaaaatgttggagggaaaatattcacatttgGTTCTTATAGGTTGGGCGTTCATACAAAAGGTGCTGATATTGATGCTCTCTGTGTTGCACCACGTCATGTGGACAGATCAGacttcttttcttcattttatgaAAAACTCAAAGAACAAGAGGAAGTCAAAGACTTAAGAGCTGTCGAGGAAGCATTTGTTCCAGTTATAAAATTATCATTTGATGGCATAGAGattgacattttatttgctcGGTTAGCATTGCAAACAATTCCTGAAGACTTGGACCTTCGAGATGATGGTTTACTCAAGAATTTAGACATTAGGTGCATAAGAAGTCTTAATGGTTGCAGAGTCACAGATGAAATCTTACATCTGGTACCAAACATTGAAAACTTTAGACTTACCCTAAGGGCTATCAAGCTGTGGGCAAAGCGTCACAACATATATTCTAACATACTTGGCTTCCTTGGTGGTGTTTCATGGGCTATGCTTGTGGCACGAACATGCCAGTTGTATCCAAATGCTGTAGCCTCTACACTTGTTCACAAGTTCTTCCTGGTGTTCTCAAAATGggaATGGCCAAACCCAGTGCTACTGAAACAGCCTGAGGACTGCAACCTCAATCTTCCAGTTTGGGACCCTAGgGTAACTCCAAGTGACAGATACCATTTGATGCCCATCATTACACCCGCCTATCCACAGCAAAACTCCACCTATAATGTATCGGTCTCAACTCGAGCGGTTATGATTGAGGAGTTTAAACAGGGTCTTGCCATCACAGATGAAATTTTGCAGAATAAAGCAGAGTGGTCCAAACTTTTTGAAGCACCAAActtctttcaaaaatacaaGCATTATATTGTGTTGCTAGCAAGTGCACCCACAGAAAAGCAGCACCTGGAGTGGGTTGGTCTGGTGGAATCAAAAATCAGAATCTTGGTTGGAAATTTGGAGAAGAATGAGTTCATCACCCTCGCACATGTCAATCCTCAGTCATTCCCCGGTCCCAAGGAGGGCAGCGAGAAGGAAGAATTCAGCACAATGTGGGTCATAGGGATCGTGTTTAAGAAAATGGAGGGCTCTGAGAACCTCAACGTGGATCTGACGTTCGACATTCAGTCTTTCACTGACACAGTTTACAGGCAAGCAATAAGTAGTAAAATGTTTGAGCCTGATATGAAAATTACAGCAATGCATGTAAAGAGGAAACAACTACATCAACTACTGCCAAACTTAGTCATACAGAAGAGAAGAAAGcacTCGACGGAGGGCGTAAAGCACCTGAACGAGAGCAGCCTGGACCTGTCTCTGGACAGTGACAACAGCATGTCCGTGCCTTCGCCCACTGCTGCGTCGAGGACCTGCTCACAGAACCGCTGCACCAGCCCCCAGGGGCACAGCCCAGCAGCATTAGTGACCAACCCCCTGTCCTCTGACCCGCCGGCCAAGTTAGACGCTGCAGGAAGTGCCGTGACCTCAGGAATATCCAATGAGAGTGTTTCCCAGAAGCCCTTGGCCGCCGCCGTGCCCGCAAAGCCCAGTGTGACCCGGGTGGTGTCGTCCACGCGTGTGGTAAACCGCACCCCTCCTCCCGTGGGAACCCCACCAAAACCTGCGCTGAAGAGATCGGGATCTCCCCTGCCAGAGGAGAGCCCCAAGAAGGAGAAAGTAGAGGAGgaCACTTCAGAAAAACCTGTGTTGGGAGACAGCAGTCCAGTAGATCCCGATGCGAAGCCCACTGCGGAGACGGAGAGTGGAGAAGAAATAAGTCCTGTTAATGCAACTCCAGGAGACATAAAAATCGAGCCGGATGTAAAGGAGCTGGATTCAGATGAAAAGTTCACTCCACCGATTCCTGttgcacagAGAATCCCCAGCACCGACCTCTCCGACGTCCCCCTTCTCCCGGCCAATCCCATTCCAGTGGTGAAGAACTCAATTAAGTTGAGACTAAGTAGGTAGGACCCGAGCAGAACCCCCGAAGGCCCCTGGAGCCCGAGACTCGCACACCCGAACCGAAAGGTTGCGACGTGTGCGAGGGGCCAGAGCCGTAGCTGCACCCCAACGGGACTCTCGGTGCCGATTCTGCGTTTGTCAGCCAGGGGCGGCTGGCTGCTGTTTTCTGTGAACACTTGATGGCATTATTCCCCGAGTAGCTGTTGACAGGAATCTTTGATGAGCAAATAAGATGTCATATCTCACATTAATCATGTGACTGctaagatgtgtgtgtgtgtggatttttttcgtttttgtttttccatggtttatatgaaaaatggaaaagtccaTTACAGGCACAAGGTGGCTCTTTTGTACGGCGTTTAGCTTTATCTTAACTCCGATAAAGCTGGGTTGGCTTTACAACAGTCACAGTCAACTTCGAGCACTGCCCAGTGACTAGAGTTATTAACAAAGACCactaaatacataataagaATCAAAGTAAGGTACTGTTCTGTCAGCTGCCCAGTGCCTTTGTATCGTCTTCAAAATCTGATTCAATTAAAGTCGTACACAGTTATGAAAATTGATTAGTCTTCATGATCAAGTATAGCTAATTGAAGTAGCTCAAGTCTGAGTACGTAATTTTACCAAAAATACATTCTCAATTCCAtgttatgtttgtattaatatacCATGTTTGCTGATGGTGGCTAGAAACCTTACCCAGGCACAGTGCAGTTATTTCTAAGGAAATTTCTACATTTTTAGTGGCCGATATGAAAGAGGTTTTTGGACGTGAAATGAAGTGCGGTTTTCTGTACCAGCTTGTGTAGAGAGTCCTGAACTGTACctcatgtgtgtctgtattgtacaaaaaaaaaagaaaaacaatacattttcttttggagATTGTAAGAGTTTAGTTATTGCTttggatttttaattttgtaaaatgttgtctTGGGTAAAACAATGACATATTTTTAGTGTGCGGTAAGATTATACGAACCTAAgttgagtatttattttattggacattcttggaaaacaaaatcaaaataatttagtttttggaaCAAGGAGGTTAGGTATTTCTTTACAACGAAAATAACTGTCACTGATTACTGgatttcttgatttaatatgtgttggaaaactaaacaaaatgctttgtcCTAActgtttgtgttaattttgtGGAAAAGCTAGGCAGTTCTGTGGAAGTAATAAACACACTGTAACAGAAATGTTTGTATTGATCACTATTTTAAATTTAgttgagctttttttttcccctcatgtTTAAATTTCTAAAGCatcttatgtgttttttttttcttccgaTTATTTGTAAGAAGGGATTGTGTACTTTcacaaatcaaataaagtaaTAAGATGCTGACAAGCTAAAGTATAGCCACTATTCAGCCATGGCTCTTCTTTAATGTATCTCTCCATGTACGTTTaagaaacaatttaaacagac

Function

symbol description
papola Predicted to enable polynucleotide adenylyltransferase activity. Predicted to be involved in mRNA polyadenylation. Predicted to act upstream of or within RNA 3'-end processing; RNA polyadenylation; and mRNA processing. Predicted to be active in nucleus. Orthologous to human PAPOLA (poly(A) polymerase alpha).

NR:

description
PREDICTED: poly(A) polymerase alpha

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG:

id description
K14376 PAP; poly(A) polymerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000490 True 3862 mRNA 0.43 23 16216282 16232431

Neighbor

gene id symbol gene type direction distance location
AMCG00000492 NA coding upstream 811 16208705 ~ 16215471 (+)
AMCG00000491 galc,LOC107372531 coding upstream 8006 16198281 ~ 16208276 (+)
AMCG00000483 NA coding upstream 187121 16023883 ~ 16029161 (+)
AMCG00000489 NA coding upstream 457835 15752425 ~ 15758447 (+)
AMCG00000485 gsc,LOC101076325,LOC102791948,LOC103364184 coding upstream 479678 15734796 ~ 15736604 (+)
AMCG00000486 vrk1 coding downstream 48475 16280906 ~ 16291497 (+)
AMCG00000495 ccnk,LOC107560198,LOC107678663 coding downstream 508253 16740684 ~ 16745744 (+)
AMCG00000512 NA coding downstream 563662 16796093 ~ 16801794 (+)
AMCG00000513 NA coding downstream 582412 16814843 ~ 16849247 (+)
AMCG00000502 NA coding downstream 711629 16944060 ~ 16944477 (+)
G150642 NA non-coding upstream 25261 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 597256 15615130 ~ 15619026 (+)
G150506 NA non-coding upstream 916404 15295607 ~ 15299878 (+)
G150484 NA non-coding upstream 965553 15250517 ~ 15250729 (+)
G150475 NA non-coding upstream 987020 15228957 ~ 15229262 (+)
G150686 NA non-coding downstream 412697 16645128 ~ 16646915 (+)
G150687 NA non-coding downstream 415474 16647905 ~ 16649574 (+)
G150689 NA non-coding downstream 449484 16681915 ~ 16722627 (+)
G150767 NA non-coding downstream 964046 17196477 ~ 17501853 (+)
G150831 NA non-coding downstream 1423145 17655576 ~ 17702341 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 1271882 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 2062442 14133138 ~ 14153840 (+)
G150069 NA other upstream 2523693 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 3185429 12966877 ~ 13030853 (+)
G149859 NA other upstream 3488379 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 579022 16811453 ~ 16814365 (+)
G150750 NA other downstream 703562 16935993 ~ 16938282 (+)
G150811 NA other downstream 1313023 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 1516079 17748510 ~ 17759582 (+)
G150976 NA other downstream 1921433 18153864 ~ 18159321 (+)

Expression


Co-expression Network