AMCG00000495 (ccnk,LOC107560198,LOC107678663)


Basic Information

Item Value
gene id AMCG00000495
gene name ccnk,LOC107560198,LOC107678663
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16740684 ~ 16745744 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000495
GGAAAAATGGCGGCGCCCACGGTGCGACAGAGAGTTGTGTTGGGGAATTAAATCGAAACAATAGACCCTTTAAGTAGTTTACATCCGATCCAGGGTAGGGATCGCTGTCAACATATCATCCGGCCGAGGCAGGCTTTATTCCTCCGGCAGGGATTTCCTTTTTAACCAATGAAGGAAAACAAGGAGAACTCAACTCCCGGGACCCCTGCGGGCCTGGACCACATAAAGCCCTGCTGGTACTGGGACAAGAAGGACCTGGCGCACACCCCGTCCCAGTCTGAGGGGCTGGATCCGGCCACAGAGGCCCGGTACCGGCGAGAGGGGGCCCGGTTTATATTCGACGTGGGGACCAGATTGGGACTacACTATGACACTCTGGCGACAGGGATTATCTACTTCCATCGCTTTTATATGTTTCATTCGTTTAAGCAGTTCCCTAGATATGTCACAGGCGCTTGCTGTCTGTTCTTAGCAGGTAAAGTCGAAGAGACTCCAAAGAAATGCAAAGATATCATCAAGACGGCCCGCAGCTTATTGAATGACGTGCAGTTTGCGCAGTTTGGGGATGATCCAAAGGAAGAAGTTATGGTTCTGGAGAGAATATTGCTACAGACCATAAAATTCGACTTGCAAGTTGAACATCCATATCAGTTTCTCCTCCGATATGCTAAGCAGCTTAAAGGTGACAAGAATAAACTACAGAAGTTGGTACAGATGGCCTGGACGTTTGTGAACGACAGCCTGTGCACGATGCTGTCCCTACAGTGGGAGCCGGAGATCATTGCCGTCGCTGTGATGTACCTGGCCGGCCGTCTGTGCAAGTTTGAGATCCAGGAGTGGACGTCTAAGCAGATGTACCGGCGATGGTGGGAGCAGTTTGTGCAGGATGTCCCCGTCGAACTTCTAGAAGATATCTGCCACCAGATCCTGGACCTGTACTCCCAAGGGAAGCAGCAGATCCCTCAGCAGCCACAGATGCCGGAGAAGGAGAAAGTGcagcccccacccccgccccagCCACAGCCGCCCCAGCCACAGCCGCCGGCATCAGCGCAGCCCCCGCCCCAGAACTTGGGCGGGCAGAGCCAGCCGACGCCGCCCCCGCCCAAGAAGGCCTCCCCGCAGGCCAGCCCCGCCCGCCAGCTCAAGAGGACGCATGTTGTATCTCCTAAAGATGAACCCAAGGTACCAGaacAAGTAGGGTCCAAAATTCCCCGACTGGAGACCCCAATGCCTCCTCTCCCCACTGTACAGCCCCCAGTCGAACGCAAACCTCCTCCGGTGGCAGCACCCGTCGCAGAACCGGAGATGCTACCTACGAGCGACGCCATCGAGCTTCCCAAAGCCCCGGTTCCTCCCCCGCCACACCAGGCCCCTGTTCACCAGCCACCCCCACTGCCTCACAGACCGCCGCCTCCCCCGCCATCCAGCTACATCATGGGCATGTCCACCTCCAGCTCCTACATGTCCGGCGAGGGCTACCAGAGCCTCCAGTCCATGATGAAGACCGAGGGGCCTTCCTACAGCACCATGCCTCCCACCTACGGACCTCCGATGCAGTACCACCCCCATGTCTACCCGCCCAACCCGCCCCCTCCGGTGCCCCCGCCTCCCGCTACCTACCCTCCTCCAAATCTGCCGCCCCCGTCCCCCGCCTACCCGCCTCCGGGCTACAACCACAGCTACCCTCCTCCTCCACGGATGCCCCCGGGCCACGGTGTGCCGCCCCCGGTGATGGGCATCCCCCCGAGCAATTACCCGCCGCCTCCTGGGCCCCCTGGCGGACAGTCGCAGGTGCCGCCCCCGCTGCCACCCCCTGGCATGCCCCCAGTGAGCGGCCTGAACCGAGGAGGGTGGATgagatga

Function

symbol description
ccnk Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Acts upstream of or within central nervous system development. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Is expressed in central nervous system. Orthologous to human CCNK (cyclin K).

NR:

description
PREDICTED: cyclin-K

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K23326 CCNK; cyclin K

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000495 True 1866 mRNA 0.59 11 16740684 16745744

Neighbor

gene id symbol gene type direction distance location
AMCG00000486 vrk1 coding upstream 449187 16280906 ~ 16291497 (+)
AMCG00000490 papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 508253 16216282 ~ 16232431 (+)
AMCG00000492 NA coding upstream 525213 16208705 ~ 16215471 (+)
AMCG00000491 galc,LOC107372531 coding upstream 532408 16198281 ~ 16208276 (+)
AMCG00000483 NA coding upstream 711523 16023883 ~ 16029161 (+)
AMCG00000512 NA coding downstream 50349 16796093 ~ 16801794 (+)
AMCG00000513 NA coding downstream 69099 16814843 ~ 16849247 (+)
AMCG00000502 NA coding downstream 198316 16944060 ~ 16944477 (+)
AMCG00000498 adck1 coding downstream 260725 17006469 ~ 17051834 (+)
AMCG00000503 NA coding downstream 358336 17104080 ~ 17106602 (+)
G150689 NA non-coding upstream 18057 16681915 ~ 16722627 (+)
G150687 NA non-coding upstream 91110 16647905 ~ 16649574 (+)
G150686 NA non-coding upstream 93769 16645128 ~ 16646915 (+)
G150642 NA non-coding upstream 549663 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 1121658 15615130 ~ 15619026 (+)
G150767 NA non-coding downstream 450733 17196477 ~ 17501853 (+)
G150831 NA non-coding downstream 909832 17655576 ~ 17702341 (+)
G150877 NA non-coding downstream 1123554 17869298 ~ 17870290 (+)
G150886 NA non-coding downstream 1204190 17949934 ~ 17971252 (+)
G150909 NA non-coding downstream 1228581 17974325 ~ 17974800 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 1796284 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 2586844 14133138 ~ 14153840 (+)
G150069 NA other upstream 3048095 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 3709831 12966877 ~ 13030853 (+)
G149859 NA other upstream 4012781 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 65709 16811453 ~ 16814365 (+)
G150750 NA other downstream 190249 16935993 ~ 16938282 (+)
G150811 NA other downstream 799710 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 1002766 17748510 ~ 17759582 (+)
G150976 NA other downstream 1408120 18153864 ~ 18159321 (+)

Expression


Co-expression Network