AMCG00000512


Basic Information

Item Value
gene id AMCG00000512
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16796093 ~ 16801794 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000512
GTTTACCAGGACCTCTCCACAATAGTATCCCTATGCGCTCCTgcccaattaattaattgcgtTTTCCCGACTTCCTTTCTCGTTTTGATTTCCTGTTGGGGAATCCAGCAACAGCCGCAGGATTCATGTGGATGAGTTTCTCTAGCCAGTAACtgagaagcatttattttttttgcggTTTTACGCAGTGGTGCATGTGGAGAAAAGGTGATTTATGCGCTACAAGAAAGAGATCGTCATAATGCTTTCGTATtagagggagggaagagaaaCCCTTGTCTGTGGCCAGAAAACAAGGGCAGATCACTTGGGGAAAAGAGACAGTGGTACTTATGGAAAGGAGCAGTCTTTTGGGTTTGTTTAGAgggcatgtttttttcttgcgCATGGTTTATACATCGATCGGGATGAGATAGTTGATGATTAAAACCCGGGCAAAGTGCACAGTCCAGAAAACCGACACCACCAAGtcaagcagtttttttttttttgtcagtgtgcaTAACTTCAGTTAAAGTAACATGGTCTATTATTGTGCTAGACCAAGGCATGGCTGGCATGCTCCCGTCCTTTGGGTCTTTTTATCTGCTCTTTTTTGGATGACACCTGTGTCCTTGCACCCCCAATGTCTGGATTTCAAGCCCCCTTTCCAGCCCCAGGAGGAGCTCACTTTCTGCGTCTTGTACAAGAACTTCGGCTGCTGTGATTCAGCCAAGGACCAGGAGCTGATGGGCAAATTCTACCGGATTATGGACAATTTCGACTATTATGGATATGCGAAATGTGCCTCTTATGTGCAAGACATTATCTGTCAGGAATGTTCTCCATATGCGGCCCACCTGTACGACGCGGAAGACCCCAGCACTCCCGTCAGAACCATCCCCGGGCTTTGTGGGGACTACTGCTCCGAATTCTGGCAAAAATGCAGATCCACCGTAACTCTTCTCAGCGACGACCACCAGCTGGCCGAACTGGAGCAAGATCAGCACGGTTTCTGTCAGTATCTGGAGATAGAAGACCCGGACTACTGCTACCCTCATGTTCTGATCAACGAGCAACTGACTAAGAACCTGGGCCGGGTGTCGGCCGACTCCGAAGGCTGTCTGCAGCTGTGTCTGGAAGAGGTCGCCAATGGCCTCAGGAACCCTTTAGCAATGGTGCATGCCAATGATGGCACGCACCGGTTCTTTGTCGCTGAGCAGGTGGGTCTAGTTTGGACTTACCTCCCAGATCGTTCCAGGTTAGAGAGGCCCTTTCTGAACATCACCAAAGCCGTGCTTACGTCCCCTTGGGAAGGCGATGAGAGGGGCTTCCTGGGACTGACCTTCCACCCAAAGTTTAAATACAATGGGAAATTGTATGTCTATTATTCTGTGGAGGTGGATTTTGACGAGAAGATCCGAATCAGTGAGTTCCGCATTTCTCCCGGTGACATGAATACCGTGGACCACAGTTCAGAAAGGATTATTTTAGAGATCGACGAACCAGCATCAAACCATAACGGAGGTCAGTTGCTCTTTGCTGATGATGGATATTTATACATCTTCACTGGAGACGGTGGAATGGCAGGTGATCCTTTTGGGAAATATGGGAATTCTCAGAACAAGTCAGCGTTGCTGGGGAAAGTTCTCCGCATCGATGTGGACAATAATGACCGTGGGCCTCTGTACAGAATCCCGCCTGACAATCCATTCGTCCATGACACCAGAGCTCGACCGGAGGTGTTTGCCTACGGTGTGCGCAACATGTGGCGTTGCTCTGTGGACCGTGGTGACCCGCACACCAAGGAAGGCAAAGGGAGGATCTTCTGCGGAGACGTGGGACAGAATAAGTACGAAGAGGTGGACATCAtcgagaagggaaggaactacGGCTGGAGAGCAAAAGAAGGATTTTCCTGTTATGATAAGAAACTGTGTGCCAATAGCTCTTTGGATGACGTTCTCCCTATCTATGCTTACCCTCACAAAATGGGCAAATCAGTCACAGGGGGATATATCTACAGAGGCTGTGAATATCCTAACTTAAATGGCATGTATATATTTGGAGACTTCATGAGCGGTCGGCTGATGGTTTTGAAGGAGAACCGGCAGACGGGCCAGTGGGGCTACGACGAGATTTGCATGGGCACAGCGCAGACCTGTGCGTTCCCCGGACTCATCAATAACTACTATCAGTACATTATCTCCTTCGCCGAAGATGAAGCTGGAGAGCTGTATTTCATGTCTACTGGAGTCCCCAGTGCAACATCTCGCTCTGGTGTCGTGTACAAAATTGTAGATCCATCACGACGAGCACCACCGAGAAAATGTCATTATGACCCTCTTCCAGTTGTGGTTAAAAGCAAGATTATCCAATTTGAGCCAACGGAGAAGCTCATTGGGGACATTTCACCCACCAAGCGTCCGAAACCTAAAGTTGCATTAACAACAGCAGCCCCCCAGCCCACCACGCCAGACTGGCTAGAACAACTGATCGAAATGCTGAGACTCAGACAAGCTGCTGCAGAGAGAACCACCGCGGCCCCGCCGACCACGCCGACCACGACAACCGCAGCCCCCAAAAGCAGCAAACCGGCCCGGTCGCGGAAAGGAGGCAGGAGGCGGAAAGGCAAACACAAATCAGAAACGCAGAACGGAGCGCTGAGACTGATCGACGACGAGGGACGGCCCGACCGCGGCCGCGTGGAGATCTACGTCAACGGGGAATGGGGGACGGTCTGCGATGACCTCTGGAATGACCAGGCGGCGGCGGTGGTCTGCCAGCAGCTCGGTTTCCGCTACGCCGTGAAGGCCTCCAAGCACGCCGAGTTCGGGGAGGGGAGACACTTAAAGATACTACTCGACGACATCCAGTGTGAAGGGACTGAGGAGAGCCTGCTGGACTGCAAGCATGCTGGGATTGGCAGACACAACTGTGCGCACTACGAGGATGCGGGGGTCATATGCGGAAACGCTGTATCTGGAGAGTATTAGAGGGTTACTTCATTAATGTGAACAGGTTCATTTCAACTAAGAGAAGAAATCAAATCTCGGTTCTGTTGATTTTGGCACATACGTCTACCTCTTTATTATGAGACAACACTGCTTTAAAACTCACACTAATTGTTCATGACCTCGTCACCCTGGCAAACACTTTCTAATATGAATATGTTTCAGATAACATGCCTGTGACTGTAGTACGATTTAATGTGGAATGTAAACATGTGTAACATTTTCAACTGATGTAAGGaggtagaaaataaaaacacg

Function

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0048038 quinone binding molecular_function
GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000512 True 3251 mRNA 0.49 9 16796093 16801794

Neighbor

gene id symbol gene type direction distance location
AMCG00000495 ccnk,LOC107560198,LOC107678663 coding upstream 50349 16740684 ~ 16745744 (+)
AMCG00000486 vrk1 coding upstream 504596 16280906 ~ 16291497 (+)
AMCG00000490 papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 563662 16216282 ~ 16232431 (+)
AMCG00000492 NA coding upstream 580622 16208705 ~ 16215471 (+)
AMCG00000491 galc,LOC107372531 coding upstream 587817 16198281 ~ 16208276 (+)
AMCG00000513 NA coding downstream 13049 16814843 ~ 16849247 (+)
AMCG00000502 NA coding downstream 142266 16944060 ~ 16944477 (+)
AMCG00000498 adck1 coding downstream 204675 17006469 ~ 17051834 (+)
AMCG00000503 NA coding downstream 302286 17104080 ~ 17106602 (+)
AMCG00000504 nrxn3,LOC101487700,LOC107751785,LOC102792091,LOC107676277 coding downstream 368456 17170250 ~ 17183080 (+)
G150689 NA non-coding upstream 73466 16681915 ~ 16722627 (+)
G150687 NA non-coding upstream 146519 16647905 ~ 16649574 (+)
G150686 NA non-coding upstream 149178 16645128 ~ 16646915 (+)
G150642 NA non-coding upstream 605072 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 1177067 15615130 ~ 15619026 (+)
G150767 NA non-coding downstream 394683 17196477 ~ 17501853 (+)
G150831 NA non-coding downstream 853782 17655576 ~ 17702341 (+)
G150877 NA non-coding downstream 1067504 17869298 ~ 17870290 (+)
G150886 NA non-coding downstream 1148140 17949934 ~ 17971252 (+)
G150909 NA non-coding downstream 1172531 17974325 ~ 17974800 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 1851693 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 2642253 14133138 ~ 14153840 (+)
G150069 NA other upstream 3103504 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 3765240 12966877 ~ 13030853 (+)
G149859 NA other upstream 4068190 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 9659 16811453 ~ 16814365 (+)
G150750 NA other downstream 134199 16935993 ~ 16938282 (+)
G150811 NA other downstream 743660 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 946716 17748510 ~ 17759582 (+)
G150976 NA other downstream 1352070 18153864 ~ 18159321 (+)

Expression


Co-expression Network