AMCG00000552 (ppm1a,LOC106610975)


Basic Information

Item Value
gene id AMCG00000552
gene name ppm1a,LOC106610975
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18428915 ~ 18433601 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000552
AAAGCAACCATGGGCGCGTTTTTGGACAAGCCAAAGATGGAGAAACATAACGCCCACTCGGAGGGGAACGGCCTGCGCTACGGGTTGAGCAGCATGCAGGGCTGGCGGGTCGAGATGGAGGACGCCCACACCGCCGTCATCGGTCTCCCCAATGGGCTGGACCCCTGGTCGTTCTTCGCCGTGTACGACGGGCACGCCGGCTCGCAGGTGGCCAAGTACTGCTGCGAGCACCTGCTGGAGCACATCACCAGCAACCCAGACTTCAAGGGCGCCGACCCGGAGCCCACGGTGGAGAACGTGAAGAGTGGCATCCGCACTGGCTTCCTGCAGATCGATGAGCACATGCGCGCCATCTCGGAGAAGAAGCACGGTGTGGACCGCAGCGGCTCCACCGCTGTTGGCGTCATGATTTCGCCCCAGCACGTTTACTTCATCAACTGCGGCGACTCGCGCGGCCTGCTCAGCCGCAACGGCAAGGTGCACTTCTTCACGCAGGACCACAAGCCCAGCAACCCACTGGAGAAGGAGCGCATCCAGAACGCCGGTGGCTCTGTCATGATCCAGCGCGTCAACGGCTCCCTGGCCGTATCCCGGGCGCTCGGGGATTTCGACTACAAGTGTGTCCATGGCAAGGGGCCGACGGAGCAGCTTGTCTCGCCGGAGCCCGAAGTGTACGCGATCGAGCGGTCCGAGCCCGAGGACGAGTTCATCATCCTCGCCTGCGATGGCATCTGGGACGTCATGGCCAACGAGGAGCTCTGTGACTTTGTCCGGTCCCGGCTGGAGGTGACGGACGACCTGGAGAAGGTGTGCAACGAGATCGTGGACACCTGCTTGTACAAGGGAAGCCGGGACAACATGAGCGTGGTGCTGATCTGCTTTCCCAGCGCTCCCAAGATGTCCCCAGAAGCGGTGAAGAGGGAGGCGGAGCTGGATAAGTACCTGGAAAGCAGAGTAGAAGAGATCATTAAGAAGCAGGGTGACGAGGGAGTGCCAGACTTAGTCCACGTGATGCGTACGTTAGCGACGGAGAGCATCCCCAACCTCCCGCCAGGGGGGGAGCTGGCGAGCAAGTGA

Function

symbol description
ppm1a Enables R-SMAD binding activity and calmodulin-dependent protein phosphatase activity. Involved in peptidyl-threonine dephosphorylation; positive regulation of transcription, DNA-templated; and regulation of signal transduction. Located in cytosol; nucleus; and plasma membrane.

NR:

description
PREDICTED: protein phosphatase 1A isoform X2

GO: NA

KEGG:

id description
K04457 PPM1A, PP2CA; protein phosphatase 1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000552 True 1077 mRNA 0.62 3 18428915 18433601

Neighbor

gene id symbol gene type direction distance location
AMCG00000551 NA coding upstream 24118 18392416 ~ 18404797 (+)
AMCG00000555 LOC104966444 coding upstream 92468 18308336 ~ 18336447 (+)
AMCG00000562 zfyve21,LOC106610961 coding upstream 177251 18245088 ~ 18251664 (+)
AMCG00000563 klc1 coding upstream 187973 18222486 ~ 18240942 (+)
AMCG00000561 NA coding upstream 223935 18201482 ~ 18204980 (+)
AMCG00000553 six6,six6a,LOC107743981,LOC106598791,LOC107588601 coding downstream 46770 18480371 ~ 18483206 (+)
AMCG00000571 NA coding downstream 135564 18569165 ~ 18583738 (+)
AMCG00000579 prkch,LOC100380676,LOC107675581,LOC107548619 coding downstream 168949 18602550 ~ 18606788 (+)
AMCG00000580 NA coding downstream 177306 18610907 ~ 18613346 (+)
AMCG00000581 NA coding downstream 188801 18622402 ~ 18623132 (+)
G151052 NA non-coding upstream 43869 18384600 ~ 18385046 (+)
G151050 NA non-coding upstream 68623 18359247 ~ 18360292 (+)
G150953 NA non-coding upstream 344228 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 347574 18078114 ~ 18081341 (+)
G150913 NA non-coding upstream 365569 17994559 ~ 18063346 (+)
G151217 NA non-coding downstream 425662 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 429423 18863024 ~ 18868044 (+)
G151226 NA non-coding downstream 486320 18919921 ~ 18921366 (+)
G151310 NA non-coding downstream 697024 19130625 ~ 19130890 (+)
G151339 NA non-coding downstream 871645 19305246 ~ 19307462 (+)
AMCG00000550 NA other upstream 9339 18411443 ~ 18419576 (+)
G150976 NA other upstream 269594 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 669333 17748510 ~ 17759582 (+)
G150811 NA other upstream 880407 17545454 ~ 17548508 (+)
G150750 NA other upstream 1490633 16935993 ~ 16938282 (+)
AMCG00000573 NA other downstream 56250 18489851 ~ 18530757 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other downstream 100868 18534469 ~ 18565627 (+)
G151522 gpr135,LOC107564991 other downstream 1535738 19969339 ~ 19972015 (+)
G151676 NA other downstream 2408337 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 3093269 21526870 ~ 21533538 (+)

Expression


Co-expression Network