AMCG00000555 (LOC104966444)


Basic Information

Item Value
gene id AMCG00000555
gene name LOC104966444
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18308336 ~ 18336447 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000555
acagtagtagtagtagtagtagtagtagtaggggAGGATCAGGCTATAGTAAATGCGGGAGTGCAGAGGTGAGAGCCGGGCGCACATATCAGtgacagtagtagtagtagtagtagtagcagtagtagtagtaggggAGGAGCAGGCTACACTAAGTGTTCATTGAACTGACGGTAGTACACATGAGGCGCACACGGACCACGTGTTCTCCCGGGACGACGTCACCGCGCAGCTCCGGAAGTCACATGACCGCGGCCGGGTGCGAGGGAGGCGGCAGAGACGCGGCGGCGGCTTATCGTCCATGTTGTTCAGAAAATATCACCCAGCGATTGTCAGTGAGGCGCCGCGCTTCGCCATGAACCAGACCATCACCGCGGAGCAGATCAGCGAGTGGTTCACGCTCGGCACCGAGTTCGCGCACATCCGCATCAGGGATGAGGGTCCGGCCCCGGAGGACAGCGAGCCGGCGGCCGCGGAGGGCCCTGCCACCGCCTCCGGCGCCGGGCCGGACAGGGAGGCGAGGAAGAGAGGGACTCCAGAGGGCGTGAAGACCCAGCAGGGTAGGGCGGGCGGCCTGGCCGCCCCTCAGACCACCCTGTCACTGGGCCCCTATGAGTACCCCAAACTGCCCATCACCAAGTACAGGGAGGAGCTCATCTCCCTGATTGAGAACAACTCAGTGGTCATCGTCCGCGGGGCGACGGGCAGCGGCAAGACCACCCAGCTGCCCCAGTTCATCCTGGACTACTACAGCGAGAGGGAGCACTCCTGCAACCTGGTGGTGACCCAGCCGCGCAAGATCGGCGCCAGCAGCATCGCCCGCTGGGTGGCCCGCGAGCGCAAGTGCACCCTGGGGAGTCTGGTGGGGTACCAGGTGGGGCTGGAGAAGGTGGCGACCGAGCACACCAGATTGATCTACATGACCACTGGCGTCCTGCTGCAGAAGCTGGTGGCGTGCAAGTGCCTGACTGAATACTCCCACATCTTCATAGACGAGGTTCACGAGCGCACCGAGGAGATGGACTTCCTGCTGCTGGTGGTGAGGAAGCTCCTGCGCTCCAACTCGCGCTACGTGAAGGTCATCCTCATGTCCGCCACCATAAACTGCAAGGAGTTTGCGGAGTACTTTGCTACCCCCGTGCGCAGCCACTTGAACCCGGCCTACGTGTTCGAGGTGGAGGGGGCGCCGTACACCATCGAAGAGTTCTACCTGGATGACCTGCAGAGCCTGCTGCCCTACAGGGTGGAGCCCCCTTCCCCCCAGGACCCCTTCATCACGGCGGAGATGTACAACCTGGCGGTCAGCCTCATCCAGAGCTTCGATGAGCTGGAGGCGGGGAAGCAGAGGCCGGAGCGCGAGGCGGGGTCCCTCATGCCCGAGCGTGGCAGCGTGCTGGTATTCCTGCCAGGTTTGGCGGAAATAAACTACATGCAGGAAACCCTGGATAAACTGGTGCGCAGGAGGCTGCAGGTGTACCCCCTGCACTCCACCGTGACCCTGGAGGAGCAGATCGGAGTCTTCCTGGTGCCAGTGCCCGGATACAGGAAGATCATCCTGTCCACCAATATAGCGGAGAGCTCGGTGACCGTCCCGGACGTCAAGTACGTGATCGACTTCTGCCTGGCGAAGCACCTAGTGTGCGACAAGGACACCAACTACCAGTCCCTGCGGCTCACCTGGGCCTCCAAGACCAACTGCAACCAGAGGCGAGGGCGAGCCGGCCGGGTCTCCAAGGGCTTCTGTTACCGGCTGGTGACCAGGGACTTCTGGAAGAACGAGATCCCCGACTATGTGATTCCTGAAATACTGCGCTCCCCCCTGGCCAGCATCATGCTGAAGGTGAAGCTGTTGGACATGGGGGACCCCCGGTCACTGCTGAGCACCGCGCTGTCCCCCCCCGACCTGGACGACATCGAGAGGACCATCCTGCAGCTCAAGgagCTGGGCGCCCTCTCGGTGATGCGGGACAGACAGGGGCAGTGCCGTTTCGACGGAGAGCTGACCTTCCTGGGCCGGGTCCTGGCCCACCTGCCCGTCGACCTGCACCTCGGCAAGATGATCGTGCTGGGCAATGCGTTCGGCTGCCTGGAGGAGTGCCTGATAATCGCGGCCGCCCTGTCTCTGAAGAGCTTCTTCGCCATGCCTCAGCTGCAGCGCCTGGCCGGCTACCGgAGCAAGATGTCCTTCTGTGGCAGCACCATGAGTGACTCCATCGCCCTGGTCAACGCGTTTAAGGCCTGGCGGTCCTTCAGGAGCAAAGGGGAGCTGAGGCAACCAAAGGACGAGCTGGAATGGGGCAAAGCCAACTTCATCCAAATCAAGAGAATCCGAGAGGCGGCCGAGCTGGTCCAGGACCTGAGGAAGCGCGTGGCGCAGTTCAACATGCACGTCAGTGACGCCCCCCCGCCCTCGGACTACGAGTCCACACACCTGCACAGCTTCATCCTGCAGatcgtTATCGCTGGAGCTTTCTACCCCAATTATTTCTCCCTCGGGGTCATAGATGAAGAAATCGCCTCCAAGGAGCTGTCTGGCCACGACCCGAAGACCACCGTCCTGCTGAGGAACATCCCCCCCTACGGGTTCCTGTACTACAAGCAGCTGCAGTCCCTGTTCCGGCAGTGCGGCCAGGTGAAGGCCATTGCGTTCGACTGCTCCAGGGCGTACGTGGAGTTCTTCCGCAGCTACGTGAAGGGGGGGGGCGTGCTGCCAGAGGTGGTGCTGGCGCTGCGGCTCTCTCTGCTCCGGATGCCGCTGGAGCTGGCGGTGCACCCCACCGAGGTGGTGGAGCTGAGGGCCGGGCCGCGCACCGTGTCCCCCCTGAGACACGCCAGGGTCAATGTGGACTTCCAGAACCAGAGCGTCTATCCCGTGGGCATCCTGAGCAGCTCCATTGACCCGGCCCAGCTGCCTTCCAACGCCGTCTTCATCGTCAACATCACCGAGGTGGTGGAGGTCGGCCACTTCTGGGGCTACCGGGCGGACGAGGGCAGCATGGCCAAGCAGCGTGGCCTGACGGAGGAGTTGAACCAGCGGGAGCTGAAGCCGGTGTCGGTATCCCTGTACCCCAACCTGCTGTGCCTGGCGCCCTTCACCGAGGCCGAGGAGAGCCGCTACTACCGGGCCAAGATCCTGCAGGTGTGGAGCAGCACGGCAGAGGTGTTCTTCGTCGACTACGGGAATACGACCCAGGTGAGCTGCAGCGCTCTGAGGGACCTGCCGGCCGAGTTGCTGTCCACCCCCTTCCAGGCCCAGGAGTTCCAGCTGTGCAAGCTGCGTCCGTCTGCGCAGTCGCTCATCCTGGGCGACCAGTGGAGCAGCACGGCGCGGAACCGCTTCGTCACGCTGGTGAGCGGCCACACGCTCATCGTCACGCTCTTTTCCATCCTGCACGGCGTCATGCGTGTCGAGCTCTCCATCAACACGGACACGGACGCCAGCATCAACGTGGCCGACATCCTGGTGCGGGAGGGCCACGCCCAGCCCGCCGAGGAGAGCTTCGAGTCCCAGcaGAGCCACGAGGTCCTGATGTCGATGTACAGGGACCTGCAGGAGGGGACCTTCATGGCCAATGCCACCAGCACATCCTGGAAGACCCAGAAGGAGCAGGAGAAGCAGCTGATCGACAGCCTGCTGGAGGGCTTCTCCAAGAGCCCCTCCACCTCCCTGAAGTACAAGGTCCCCTTGCACGGCCCCTCCAGCCCCCACAGGCTCACCTTCCACAGCATGAGCAGCCTCACGCACTGCAAGTCAGTGCTTATCGAGAAGGACAGTATCAACTCCATGACCGTGAACATCACACCGGAGGACCGGCACCAGAGGATGCTGGCTGCAGCGGCCGTGTCGGTCAACAGCTCCGGTAagaacaacccccccacccccgaaaCCCTCACCCTGACCGCCGCACACCCCCTCACACTGCCACACGGCTCTGTGCGCACCTGGATCGGACGCCAGAGACTGAGACCACAACGTCACCATACTGTCAGCACAGTTTCACCAACTGAAGTGCCCTGTTCAGCCGAAAAACAGACGGGCGTCTTCAGTGACGGGACTGATGAGACGCCCGATCTCCGCCTCGTCCTGTCCTACTGTGCCGGGCTCAGGGTCTCGTCTGTCCCCACAGGCACCTGCATCCTGCTGAAGGAGACGACGCTGCTGCCTGCCGTGCCCGGCCTGCCCGCCCTGGTGACTATGATCTTCACCCCTGTCATGGAGCTGCGGACGGACGAGGACCGGACGCGCTTCACCGGCGCCCTCTGTGGTCTGGGCTGGAACGGCACCACGCAGGCCGGCCTGCTGCCCGAGCACGACCTGGAGGTCACCTTCGACGTGGGCTTCGACGTAGAGGACATCACTGAGGTGACGCCGCCCTCCCGAGCCCCCCACCCCGCCCCGCCTCGGCCCGGGATCAACGCCCTGAGAGCAGCCGTGAACCGGCTGGCCTGCGAGGGGCCCAACGGTCTGCTGCACCTGGGGGCCCAGAGGATCGCTCAGCTGCAGGAGGACGTGCGCCAGAGACTGCTGCGGTGGGACAGGGGACAGCGGGGGACCCCCTCAGGTCAGACGCGCAGGCGGCCGGGCAGCTGCCTGAGAGGACCGTTTTTTCAGTCCGTGCTCGGGGACCCCCGTGTGCTCAGCGTGTTTGTGATGTTGTCGCTGTGTTTCAGGTTGTTCACGAAGTCCCCGGCCCGAGAGCCTGTTGTACCGCTGTACTACGACAAACCCAACAAGTGGAATCAGGTGGATGTCAGTCACAAGATGGAGCTGGTGCAGAAGGACAAGGAGGGCAAGAGCAAGGGCGTCCTGTACCAGCTGCACCCCATCACGCTGCTCAACATGTGAGCGACACGCACGCCCCCACAGGGGACGCGGAGCCGCCGGCGACCCGAGCCCGTTGTTCTGGGCTGGTTTCTGTTCGACATGAAAGGCCCGCAGGAAGAGGCCGTGTTTTTGGTTGTGGTTCTATAggtttttgttctttgtctCGCCAGCAGGGGGCGCTCTTTGTTCGGAATTAAATAACATTGCAGTGAAAGAG

Function

NR:

description
PREDICTED: putative ATP-dependent RNA helicase TDRD9

GO: NA

KEGG:

id description
K18408 TDRD9; ATP-dependent RNA helicase TDRD9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000555 True 5042 mRNA 0.63 35 18308336 18336447

Neighbor

gene id symbol gene type direction distance location
AMCG00000562 zfyve21,LOC106610961 coding upstream 56672 18245088 ~ 18251664 (+)
AMCG00000563 klc1 coding upstream 67394 18222486 ~ 18240942 (+)
AMCG00000561 NA coding upstream 103356 18201482 ~ 18204980 (+)
AMCG00000545 LOC104965446 coding upstream 132120 18161502 ~ 18176216 (+)
AMCG00000547 NA coding upstream 154975 18125808 ~ 18153361 (+)
AMCG00000551 NA coding downstream 55969 18392416 ~ 18404797 (+)
AMCG00000552 ppm1a,LOC106610975 coding downstream 92468 18428915 ~ 18433601 (+)
AMCG00000553 six6,six6a,LOC107743981,LOC106598791,LOC107588601 coding downstream 143924 18480371 ~ 18483206 (+)
AMCG00000571 NA coding downstream 232718 18569165 ~ 18583738 (+)
AMCG00000579 prkch,LOC100380676,LOC107675581,LOC107548619 coding downstream 266103 18602550 ~ 18606788 (+)
G150953 NA non-coding upstream 223649 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 226995 18078114 ~ 18081341 (+)
G150913 NA non-coding upstream 244990 17994559 ~ 18063346 (+)
G150909 NA non-coding upstream 333536 17974325 ~ 17974800 (+)
G150886 NA non-coding upstream 337084 17949934 ~ 17971252 (+)
G151050 NA non-coding downstream 22800 18359247 ~ 18360292 (+)
G151052 NA non-coding downstream 48153 18384600 ~ 18385046 (+)
G151217 NA non-coding downstream 522816 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 526577 18863024 ~ 18868044 (+)
G151226 NA non-coding downstream 583474 18919921 ~ 18921366 (+)
G150976 NA other upstream 149015 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 548754 17748510 ~ 17759582 (+)
G150811 NA other upstream 759828 17545454 ~ 17548508 (+)
G150750 NA other upstream 1370054 16935993 ~ 16938282 (+)
AMCG00000514 NA other upstream 1493971 16811453 ~ 16814365 (+)
AMCG00000550 NA other downstream 74996 18411443 ~ 18419576 (+)
AMCG00000573 NA other downstream 153404 18489851 ~ 18530757 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other downstream 198022 18534469 ~ 18565627 (+)
G151522 gpr135,LOC107564991 other downstream 1632892 19969339 ~ 19972015 (+)
G151676 NA other downstream 2505491 20841938 ~ 20843463 (+)

Expression


Co-expression Network