AMCG00000562 (zfyve21,LOC106610961)


Basic Information

Item Value
gene id AMCG00000562
gene name zfyve21,LOC106610961
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18245088 ~ 18251664 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000562
atgtcCGCCGTGCCTGACGGCAAGAAACTGGTCCGGAGCCCCAGCGGACTGCGGATGGTGCCGGAGAACGGGGCCTTCAACAGCCCCTTCTCGCTGGACGAGCCGCAGTGGGTCCCGGATAAGGAGGTGAGGGGGCGGCGGGGCTGTAAACAGTGGGATCACCACTGCCGCCGCTGTGGAAAGTGCTTCTGTGACAAGTGCTGTAGTAAGAAGGTGGCGCTGCCGCGGATGTGCTTCGTGGACCCGGTGCGGCAGTGCGCCGAGTGCGGCCTGGTCTCGCAGAGGGAGGCGGAGTTCTACGACAAGCAGCTCAAAGTCCTGATGAACGGAGGCACATTCCTCGTCACTCTAGGTTCCTCGGAGAAGTCTGAGACCATGGTGTGCCGGCTCTCGAACAACCACAGGTACCTGTTCCTGGACGGGGAGAGCCACTTCGAGGTGGAGCTGTCTCGGATCTCCAGTGTGCAGGTGCTGACGGAGGGCTTCACCCCCGGAGGGGGAAACTCGCGGGCCAGCGGCATGCTGCTGCAGTATAAAGCGGTGGGCTCCCCGGAGCAGCAACAGCTGCGCATGGAGACAGCAGACGACAAGAAGACGGCCTCCACCTGGCTGGCAGCCATGCACAAGGTACGGGTCTCTCGATATCGGCCCCTGATCGCAGCGCTGGCGCAGGCGACTGTTTGTTAA

Function

symbol description
zfyve21 Predicted to enable metal ion binding activity. Orthologous to human ZFYVE21 (zinc finger FYVE-type containing 21).

NR:

description
PREDICTED: zinc finger FYVE domain-containing protein 21 isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24779 ZFYVE21; zinc finger FYVE domain-containing protein 21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000562 True 687 mRNA 0.63 5 18245088 18251664

Neighbor

gene id symbol gene type direction distance location
AMCG00000563 klc1 coding upstream 4146 18222486 ~ 18240942 (+)
AMCG00000561 NA coding upstream 40108 18201482 ~ 18204980 (+)
AMCG00000545 LOC104965446 coding upstream 68872 18161502 ~ 18176216 (+)
AMCG00000547 NA coding upstream 91727 18125808 ~ 18153361 (+)
AMCG00000549 LOC106607643,LOC105020469 coding upstream 126822 18106891 ~ 18118266 (+)
AMCG00000555 LOC104966444 coding downstream 56672 18308336 ~ 18336447 (+)
AMCG00000551 NA coding downstream 140752 18392416 ~ 18404797 (+)
AMCG00000552 ppm1a,LOC106610975 coding downstream 177251 18428915 ~ 18433601 (+)
AMCG00000553 six6,six6a,LOC107743981,LOC106598791,LOC107588601 coding downstream 228707 18480371 ~ 18483206 (+)
AMCG00000571 NA coding downstream 317501 18569165 ~ 18583738 (+)
G150953 NA non-coding upstream 160401 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 163747 18078114 ~ 18081341 (+)
G150913 NA non-coding upstream 181742 17994559 ~ 18063346 (+)
G150909 NA non-coding upstream 270288 17974325 ~ 17974800 (+)
G150886 NA non-coding upstream 273836 17949934 ~ 17971252 (+)
G151050 NA non-coding downstream 107583 18359247 ~ 18360292 (+)
G151052 NA non-coding downstream 132936 18384600 ~ 18385046 (+)
G151217 NA non-coding downstream 607599 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 611360 18863024 ~ 18868044 (+)
G151226 NA non-coding downstream 668257 18919921 ~ 18921366 (+)
G150976 NA other upstream 85767 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 485506 17748510 ~ 17759582 (+)
G150811 NA other upstream 696580 17545454 ~ 17548508 (+)
G150750 NA other upstream 1306806 16935993 ~ 16938282 (+)
AMCG00000514 NA other upstream 1430723 16811453 ~ 16814365 (+)
AMCG00000550 NA other downstream 159779 18411443 ~ 18419576 (+)
AMCG00000573 NA other downstream 238187 18489851 ~ 18530757 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other downstream 282805 18534469 ~ 18565627 (+)
G151522 gpr135,LOC107564991 other downstream 1717675 19969339 ~ 19972015 (+)
G151676 NA other downstream 2590274 20841938 ~ 20843463 (+)

Expression


Co-expression Network