AMCG00000571


Basic Information

Item Value
gene id AMCG00000571
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18569165 ~ 18583738 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000571
GGAGGGACTCGATATGACGTCTTAATGACGCGACGAGCAGGAAGTGTGCGTGGAGTCATGTGATGGCGGCGGCAGGTCTGTCAGCTGAGCCCGGGTTAGAAACGAGCAGCCACAAGACTGACAGCCTCCGCCGGGACTGCGAGGGCCGGCGCTGAAATGTGGACTGACGTCGAGGGGGCTTTGATCATATTTTAATCGGGACTCACATCGCAGCAATGTCCGACTATGCGAATTACAACCGCAATGTCCAGGTTGGCGACGCGGAGCACGACGGAGAGGCGACACCGTTACTGGCCGGTGGACCCCGCGCCCCAGGCTCATCGGGGGCCTCCTTCGGCTCCTCGGTCTTCAACCTGATGAACGCTATCATGGGCAGCGGCATCCTGGGGCTCGCTTACGCTATGGCCAGCACCGGCATCCTGGGCTTCTGtgtgctgctgctgctcgtCGCATGCCTGGCCTCCTACTCCATCCACCTGCTGCTGAAGCTGTGCGACCAGACCGCCATCACCTCTTATGAAGACCTGGGCTTCCGTGCGTTTCAGCATCCTGGCAAGGTCCTGGTTGCCTGCACCATCCTGGTCCAGAACGTGGGAGCCATGTCTACATACATGTTCATCATCAAGTCTGAGCTTCCTGCAGCCATCACCAACTTCCTGCCGGAACAGCACAGCGGGGCCCCGTGGTATTTGGATGGCAGACTCCTGCTGGTAATAGTGACGGTGTGCATCGTGCTGCCACTGGCCCTGCTCCCCAAGATTGGGTTCCTGGGCTACAGCAGCAGCCTGTCCTTCCTGTTCATGGTCTACTTCGCCGTGGTGATCGTGGTGAAGAAGTGGTCCATTCCCTGCCCTCTGCCCAGCAACGGCACCGTGAGCCTCATGCAGtttgACAATTCCACTGATTGCGTTCCAAAACTGCTCACCATTTCCAGTAAGAGTGCCTACGCGGTGCCGACAATGGCCTTCTCCTTCCTGTGCCACACGGCGGTGCTGCCCATCTACTGCGAGCTGCGCAGGCCCAGCAAGAGACGCATGCAGAACGTGGTGAACAGTGGCATCACCCTGAGCTTCCTTGTCTACCTGCTGTCTGCCCTGTTTGGATACCTCACCTTCTAtgGGCAGGTGGACTCAGAGCTGCTGATGTCCTACGGGCGCTTCCAGCCCCGCGACCCCCTGGTGATGTCGGTGCGCCTGGCCATCCTCTTGGCCGTGCTGCTCACCGTGCCCCTCATCCACTTCCCCGCACGGAAGGCGGTGGTCCTGCTGCTGCACCCCGGCCGGCCCTTCTCCTGGCTGCTGCACTGCCTCGTCACGCTGGCCCTCGTCACCGTCGTGCTGCTGCTCGCTATCTACGTGCCGGACATCCAGAGCGTGTTCGGGGTCGTGGGCTCCACCACCTCCACCTGCCTGCTGTTCGTGTTCCCCGGGCTCTTCTACCTGCGCATCGGCGGAGAGCGCGGCGCGTCCTTCGGCAAACTGAGCGCCGCTGCCCTGGTGGTGTTCGGGGTGTGTGTGGGGCTCCTCAGCCTCTGTCTCATCGTGGTGACGTGGGTGGAGAGCTCCTAGTATCCGCTGAGCTCCTGGTGGCCCCGGGGAGCCCAGGCCCAGGGAGCGTCCCCTCAGAGGCTCGGTTGTCCGGTGGCGGTCCGGTCCCTGCATCTCGGGTTTCATACATAATTGATCAACGACCCTGCAATTTAAATCGGTTAATTTATGGAGAAACTGGACCGGTCTGTGCCTTGGCTTCCCTCtgctgttgggggggggggggggctctgtATTTACAAGGACTGCCTTGACACCCCAACCCTACCTCCAGCCC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14993 SLC38A6, SNAT6; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000571 True 1824 mRNA 0.61 16 18569165 18583738

Neighbor

gene id symbol gene type direction distance location
AMCG00000553 six6,six6a,LOC107743981,LOC106598791,LOC107588601 coding upstream 85959 18480371 ~ 18483206 (+)
AMCG00000552 ppm1a,LOC106610975 coding upstream 135564 18428915 ~ 18433601 (+)
AMCG00000551 NA coding upstream 164368 18392416 ~ 18404797 (+)
AMCG00000555 LOC104966444 coding upstream 232718 18308336 ~ 18336447 (+)
AMCG00000562 zfyve21,LOC106610961 coding upstream 317501 18245088 ~ 18251664 (+)
AMCG00000579 prkch,LOC100380676,LOC107675581,LOC107548619 coding downstream 18812 18602550 ~ 18606788 (+)
AMCG00000580 NA coding downstream 27169 18610907 ~ 18613346 (+)
AMCG00000581 NA coding downstream 38664 18622402 ~ 18623132 (+)
AMCG00000577 NA coding downstream 52387 18636125 ~ 18652518 (+)
AMCG00000578 NA coding downstream 70895 18654633 ~ 18658937 (+)
G151052 NA non-coding upstream 184119 18384600 ~ 18385046 (+)
G151050 NA non-coding upstream 208873 18359247 ~ 18360292 (+)
G150953 NA non-coding upstream 484478 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 487824 18078114 ~ 18081341 (+)
G150913 NA non-coding upstream 505819 17994559 ~ 18063346 (+)
G151217 NA non-coding downstream 275525 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 279286 18863024 ~ 18868044 (+)
G151226 NA non-coding downstream 336183 18919921 ~ 18921366 (+)
G151310 NA non-coding downstream 546887 19130625 ~ 19130890 (+)
G151339 NA non-coding downstream 721508 19305246 ~ 19307462 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 3538 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 38408 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 149589 18411443 ~ 18419576 (+)
G150976 NA other upstream 409844 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 809583 17748510 ~ 17759582 (+)
G151522 gpr135,LOC107564991 other downstream 1385601 19969339 ~ 19972015 (+)
G151676 NA other downstream 2258200 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 2943132 21526870 ~ 21533538 (+)

Expression


Co-expression Network