AMCG00000572 (mnat1,LOC107757134,LOC107675563)


Basic Information

Item Value
gene id AMCG00000572
gene name mnat1,LOC107757134,LOC107675563
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18534469 ~ 18565627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000572
ATGGAGGACCAGGGCTGCCCGCGATGCAAAACCACCAAATACAGGAACCCGTCGCTCAAGCTGATGGTGAACGTGTGCGGCCACACGCTGTGTGAGAGCTGCGTGGAGATGCTGTTTGTCCGCGGCTCTGGCAACTGCCAGGAGTGCGACACGCCGCTCAGGAAGAGCAACTTCCGGGTGCAGCTGTTCGAGGACCCGGCCGTCGACAAGGAGGTGGAGATAAGGAAGAAGGTGCTGAAAATCTACAATAAGAGGGAGCGCGACTTTCCCAGCCTGCGCGAGTACAACGACTACCTGGAGCTGGTGGAGGAGATCATCTACAACCTGACGAACAATGTGGATGTGGAGAACACAAAGCAGGCCATGGAACAGTACCAGAGGGAGAACAAAGACGTGATTCAAAGGAACAAGGTCAAACTGCTGGAGGTGCAACTGGAGAAACAGCGGCAAATAGTCAAGCCCACCACCTTCTCCACCGGCATCATCATGgGCCAGAAGATCTCCCTGCAGCCGGTTCCCCAGATTGCCGAGGTGCTGTACCGCTACCAGCCGCTGCACATCGACACCTGGGGGCCCCCCGTGCCGGATCTGGACCAGCTGGGCCGTCTGGGCGGGCCGGACCCCAGACCTGTACTGCGCCTCTATGGGCTGGGTGGACTGCTGGGAGAACGGTCCCAGCTAGAGTTCGGGGCCTCCGAGTCCCCGCCTCCTGCCGTATCGGGTCCGTAA
>TU190212
ggagaggcaggTGCGGAGGCCTCCTGTAATCTGGGGGAATGAGTCTGGTCTTGTCTGAGGAAGCTGAGCTCCAGTAATCCTTCACTTTGTCGTACTTCTCATTTTAAAGCACACCTTTGCCCCCaggctccctccctctctctctctcgctctctgtgtctgtgcagacCTGGCCTGGGAGGACTCTCTCCACCTTTTGCCCGGCATTTCAGCACCAGTTTAAATGTACCAACCCCTTGTGGATACCGGCCCACTCGGTGCTGCTGGGCCAACACTTCTGACGGAGAGAGAAACGACATGAAGgGCCAGAAGATCTCCCTGCAGCCGGTTCCCCAGATTGCCGAGGTGCTGTACCGCTACCAGCCGCTGCACATCGACACCTGGGGGCCCCCCGTGCCGGATCTGGACCAGCTGGGCCGTCTGGGgtacCTGAACCATGTGCGCGCCGCCTCACCCCAGGACCTGGCAGGGGGGTACACCTCCAGCTTGGCCTGCTACCGGGCCGTGCAGGACGCGTTCAGTGGCCTCTTCTATTCGCCGCTCTAAACTCCCACTGCTCCCCACCGCACCACAGACTGAGGGCCGAGCACTTGGccgggaggagggggagagagagagcggtcACAACAGCGACGCTTACGATCCCTGTGGTTTTATCTGGAATATATAGACTCTTAAACCCCCCTCCTGACAGATGTCCAGATCGACTCCATCAGGTTCTCTGGGCCGGTGTGGCCTCTGTGCTtggatgtgtgtggggtggaggGGCCACCGTACAAACCAGCACTGCCCCCCACCACCGCGTTGGTAGCTGCAGGCTCAACACTGCCACGTGATCTCGCTCAAAAGTTGTTTTGGTCAACCTAagatgtacagttttttttaataaaacattttcaataaaataaaaatcacaaccCTGCGTTTTCATTTC

Function

symbol description
mnat1 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity and metal ion binding activity. Predicted to be involved in DNA repair; regulation of cyclin-dependent protein serine/threonine kinase activity; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair and positive regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH holo complex. Orthologous to human MNAT1 (MNAT1 component of CDK activating kinase).

NR:

description
PREDICTED: CDK-activating kinase assembly factor MAT1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000572 False 729 mRNA 0.60 7 18534469 18549967
TU190212 True 934 TUCP 0.57 3 18542377 18565627

Neighbor

gene id symbol gene type direction distance location
AMCG00000553 six6,six6a,LOC107743981,LOC106598791,LOC107588601 coding upstream 51263 18480371 ~ 18483206 (+)
AMCG00000552 ppm1a,LOC106610975 coding upstream 100868 18428915 ~ 18433601 (+)
AMCG00000551 NA coding upstream 129672 18392416 ~ 18404797 (+)
AMCG00000555 LOC104966444 coding upstream 198022 18308336 ~ 18336447 (+)
AMCG00000562 zfyve21,LOC106610961 coding upstream 282805 18245088 ~ 18251664 (+)
AMCG00000571 NA coding downstream 3538 18569165 ~ 18583738 (+)
AMCG00000579 prkch,LOC100380676,LOC107675581,LOC107548619 coding downstream 36923 18602550 ~ 18606788 (+)
AMCG00000580 NA coding downstream 45280 18610907 ~ 18613346 (+)
AMCG00000581 NA coding downstream 56775 18622402 ~ 18623132 (+)
AMCG00000577 NA coding downstream 70498 18636125 ~ 18652518 (+)
G151052 NA non-coding upstream 149423 18384600 ~ 18385046 (+)
G151050 NA non-coding upstream 174177 18359247 ~ 18360292 (+)
G150953 NA non-coding upstream 449782 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 453128 18078114 ~ 18081341 (+)
G150913 NA non-coding upstream 471123 17994559 ~ 18063346 (+)
G151217 NA non-coding downstream 293636 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 297397 18863024 ~ 18868044 (+)
G151226 NA non-coding downstream 354294 18919921 ~ 18921366 (+)
G151310 NA non-coding downstream 564998 19130625 ~ 19130890 (+)
G151339 NA non-coding downstream 739619 19305246 ~ 19307462 (+)
AMCG00000573 NA other upstream 3712 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 114893 18411443 ~ 18419576 (+)
G150976 NA other upstream 375148 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 774887 17748510 ~ 17759582 (+)
G150811 NA other upstream 985961 17545454 ~ 17548508 (+)
G151522 gpr135,LOC107564991 other downstream 1403712 19969339 ~ 19972015 (+)
G151676 NA other downstream 2276311 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 2961243 21526870 ~ 21533538 (+)

Expression


Co-expression Network