AMCG00000573


Basic Information

Item Value
gene id AMCG00000573
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18489851 ~ 18530757 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000573
ATGCCTGGGAGCCGCTCGGTGAGGCGAGTCGCGGCCGCGGTGTGCGCCGGGGGTGACGGCTCAGCGGCAGGAATCCCCGTCTCCGCTCGGGCCTGCCAgcaagccagccagccagcccaTATGAGACACCCCCCAGTAGGCTTCTCAAAGACCCTCGGAGATCCTCCCGGCCCCTCGGTTTCGATCACTGAGACCGGAGGCCGGGATTCTTTGTGGATAAGCTCCTGCCCTGTTGTTTTTGGACACAGTCAGAGGACAGCAGCGGCCCATCCTGGCCCAGACCTAGCTGACAGCGCCAGTCTCACCGGGGCAGACATCTCCCACTGCAGGCTGGCAAAGGACACAGAAGATCTCCCTTCCCAGCCCAGCCTTCCACCTAAGCTCAGCCCGGCCGCCCCCCGCTCTTGCCCCGGTGGGAGGCTTTCCCTGCCCTCCGACTCCGGAGGTCCGCACTGTGGGCCACAGAGGGCCGGGCTGCTGGGAAACGGGACGCCGCGGGCTGAGCCGCCGCGGAGCATGAAAGTCGAA
>TU190202
tgtctgtgtgtctgtgagtgtgtgagtgtgtgtgcgagtgcCTGTGTGCGAgtgcctgtgtgagtgtgagtgtgagtgtgagtgtgtgtgtgtgtctgtgtgtgggtgtgtgtctgtgtggctgtgtgtgagtgtgtgggtgtgtgtgtgagtgtctgtgtgagtgtgtctgtgtgtgtgagtgtgtctgtgtgtgtgggtGTGTCTGTACATGAATCTCTTATGCGCAGATTCACCCGACTGCCAGACcagagagggaggaaagaaGGGAAGGAGACGGCAGTGTagcatatgtataaatatagagTTTTAATGGGGTATAgtgtttagaaaaataagttCACATCATTtcagaatacaaacaaacaaagacaattcAAGCTTAAAAAtcctattgttattattattattattattattatccgtACATCGCTTGCCTTTGGTATGACCAATTGAGCACACAAAAGTGTCACATGCTTAGTGTTCCACACCCCCAAGATTGTACGATCTtctgaaaaacagacagacaagtaTTTAAGGCACATATATCCAGGACGTACCGCCTCGGCTCACCATGCAAAGAGTAACAGAGATTTCCCTTCCctgcagaacacacacaaacggACACGCACACCTGGCCTCTTATTTACATGTGCTTGTACTGGACTGTgtagaaaacacaaatgaacaACTTGCTGAGACGTCAGCggaaaaaagattttaaaaatggggAGAATGCAGATCCGGTAGAGCAGTGATTATCCACCAGGGTGTCACGGCACATCGGCGCCACCGGACGTTTTGGACAATTAATTTCAAGTTTATGAAAGGGGAGAGGGGGCAGGTTGGGTTGGCGAAATTGTGAAGTGAATTATTTGTGCCTTGAGTCCTGAAGGTTTGGGAAACACTGTCATAGAGCAACTGCTGCCCAAACAAGCCGCTAAAGTCCACAGTCCACAGTCCTGCCAAGTTACATtcgaagtgtgtgtgtgtgtgcacgtgtgtgcgCGCGTGGGGGGGTGCAGGTCAGCCAGGGACAGCTCTGCACATTTCAAAGGCACATTTAAGTGCTACAAATCTCTTTGTAGTCTCctttataatgaaataatttcaCGAGGTGCCCGAGCACCGTAGCAGTTGTGTTGTGAGTAACAGTCAGCGACTCCCACTGAACCCACGCCTGCAGCAAAGTATGAGTATGTAATGCTTGCATACAGGTCAGGGGGTCTCTTGGCAAATCGTTTTTCTATCGACACTGCAATGCTTGATGTAGTGCAGATTACATTTCACTACAATTACTTCCATCGTGTTTTGACAGGGATTCTTTGTGGATAAGCTCCTGCCCTGTTGTTTTTGGACACAGTCAGAGGACAGCAGCGGCCCATCCTGGCCCAGACCTAGCTGACAGCGCCAGTCTCACCGGGGCAGACATCTCCCACTGCAGGCTGGCAAAGGACACAGAAGATCTCCCTTCCCAGCCCAGCCTTCCACCTAAGCTCAGCCCGGCCGCCCCCCGCTCTTGCCCCGGGTGTCTGtgcagtgggggtgggggcagcaACTCAGCTCAGCCCTGCCTCCCCTCCCCGGACTCTGCTCTCCCAGGTCTGCATCTGGTTTTGGGTGTGAGAGGAGCTCAGTGTAAACAGTAGGGAGGAGACTCTGGGCCACACTGAGGTGGTATTTACCCTGCCCTAATCCCGGGGCTAAAGCAGCACACATGGAAGCGAGCCCTCCTGTTGCCTGGCAGTGGGAGGCTTTCCCTGCCCTCCGACTCCGGAGGTCCGCACTGTGGGCCACAGAGGGCCGGGCTGCTGGGAAACGGGACGCCGCGGGCTGAGCCGCCGCGGAGCATGAAAGTCGAAGTGATCCCACCCTGCTGTCGACAACTCAGAGAGAAACTGCCAGTCTGCTGGAGGTCTTACacccacaaaacaaagcaaacaaaaatgtgggTTGATAATCTGCAAGCTAATTGCAAtcctttattaattaattgtggcAGAACACTGTTAATAGGTCATACTATTGACAGCATTGCTAAACACTACAAGTATGTTTGCAACAGACTTTGCTgggcattttcttttacatctgaaatgtatttgaatgaacATGATTAGAAAAGAATTAAACAGCTATACatgagtgtgtgtttattttaattttctaaatgttCAGCAGTCTAGATTCCCAGGGTCCCTCACTGCTgtgaacagaaacaaagaaaaacccGTAACTATTCTTACAAAAACACCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000573 False 528 mRNA 0.67 5 18525189 18530362
TU190202 True 2257 lncRNA 0.49 3 18489851 18530757

Neighbor

gene id symbol gene type direction distance location
AMCG00000553 six6,six6a,LOC107743981,LOC106598791,LOC107588601 coding upstream 6645 18480371 ~ 18483206 (+)
AMCG00000552 ppm1a,LOC106610975 coding upstream 56250 18428915 ~ 18433601 (+)
AMCG00000551 NA coding upstream 85054 18392416 ~ 18404797 (+)
AMCG00000555 LOC104966444 coding upstream 153404 18308336 ~ 18336447 (+)
AMCG00000562 zfyve21,LOC106610961 coding upstream 238187 18245088 ~ 18251664 (+)
AMCG00000571 NA coding downstream 38408 18569165 ~ 18583738 (+)
AMCG00000579 prkch,LOC100380676,LOC107675581,LOC107548619 coding downstream 71793 18602550 ~ 18606788 (+)
AMCG00000580 NA coding downstream 80150 18610907 ~ 18613346 (+)
AMCG00000581 NA coding downstream 91645 18622402 ~ 18623132 (+)
AMCG00000577 NA coding downstream 105368 18636125 ~ 18652518 (+)
G151052 NA non-coding upstream 104805 18384600 ~ 18385046 (+)
G151050 NA non-coding upstream 129559 18359247 ~ 18360292 (+)
G150953 NA non-coding upstream 405164 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 408510 18078114 ~ 18081341 (+)
G150913 NA non-coding upstream 426505 17994559 ~ 18063346 (+)
G151217 NA non-coding downstream 328506 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 332267 18863024 ~ 18868044 (+)
G151226 NA non-coding downstream 389164 18919921 ~ 18921366 (+)
G151310 NA non-coding downstream 599868 19130625 ~ 19130890 (+)
G151339 NA non-coding downstream 774489 19305246 ~ 19307462 (+)
AMCG00000550 NA other upstream 70275 18411443 ~ 18419576 (+)
G150976 NA other upstream 330530 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 730269 17748510 ~ 17759582 (+)
G150811 NA other upstream 941343 17545454 ~ 17548508 (+)
G150750 NA other upstream 1551569 16935993 ~ 16938282 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other downstream 3712 18534469 ~ 18565627 (+)
G151522 gpr135,LOC107564991 other downstream 1438582 19969339 ~ 19972015 (+)
G151676 NA other downstream 2311181 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 2996113 21526870 ~ 21533538 (+)

Expression


Co-expression Network