AMCG00000596


Basic Information

Item Value
gene id AMCG00000596
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18928666 ~ 18947466 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000596
ATGTCTACTCAcattgtctctctgtgtccgcAGGCCCTGGCGTCCGAGGGCGAGGCGGTGGAGTGCCAGCTGGAGGAGCTGCGGGGGAGCGAGCTGGCCCTGCGGCGGGCCGAGAGCGAGGGCGGGGGTGGGGCGGGCGGCGAGTTCTGGGGGGCCGCGGGGGCCGTGAGCGCGCTGTGGAAGGACTGGCTGCGGCAGAGGTGCTGCGTACAGAGGCTCACCCTGCGCTGCGAGAACACGGCCCCCCAGTGGAGAGTCGTCACGGAGAGCCTGGAGAAGGCCTCGTCGGCACTGGACCAGCTGCAGGCGGAGCTGCCACAGATCTCCCAGGCGAAGGGCAGCGGGGAGGAGCTGCTGGCACTGCTGGGCGAGGTGGAGGGGTACGAGAGCCGCCTGGATTCCGAGCGCGCCGCCCTCTCCTCGCTGGGCTCGACGGTCATGCGTCTCCTCGGCGTGGCGGACCGGGACACCGCCGTCCCCATCTTCCGGGAGCTGCAGGCCATGGAAAGGCGCTATGACGCCCTGAGACAGTCGGCAATGGCAGGCCGGCACGCCGTGCAGACGGAGGTGCAGGAGCGCGAGCGCGTGAAGGAGGAGATCGGCAGCGTGAGGGAGTGGCTGCGGTCCGTGGTGTCGCTGTTGTCTGTGCTGCATCACTCCCCCAGCTCTGAGGATCTGCAGGAGGTCCAGACCGAGCTGGGCTCCCAGAACGCCGTGGTGCGGGGCATCGTGGACAGCCTGCGCATGAAGTACTCGGACATGTACTCGCTGGTGCCGGCCGAGATCGAGGTGCCGCTGCAGGAGGTCCGGCGCAGCCTGAGGGAGGTGGAGGAACAGGTGGAGGACGCGGTGGAGAAAAGCTGTCCTCTCCATATCCTGAGAGCCAAGATCGCAGACATCTCCGCCGGGCTGAGCGCCGTGCTGGGCCTGCTGCAGATCTCCGAGCTGGAGGCCGAGGTGCAGGACCTGTCTGTGGAGAAACCCGACAAGGCCCAGCAGATGATGGACAGCCTGATCGAGCCCCTGCAGCTCTACCAGAATGTGGCCAAGCAGGCAGAGCAGAGGACAGCCTTCCTCAGCAAGATCAGCTGCAGCCTGCAGGAGTACGAGGAGATGCTCATCAGCACCAACAACTGGCTCAGCGAGGCCCAGCCCTGGCTCTCCGCCAGCTACACCTACAGCTCGGCCAAGTGTCTGGGCAAACACGCCAGCGCCATGCAGGGCTTCGTGCCGCTGCTGCAGGAGGTGTCGGCGGTGTGCGACACGGCCGCCATGCGGGAGCAGCTGACCCGGGCAGAGCAGCGTATCGACACCCTGCAGCAGGGCATTCTGGGACCCCTGCCGCAGCTCCAGCAGGCTGCCACGGAGCTGGAAGCCATCGAGACGGACGTTAAAAGGATGGAGAAACAAATCGCTAAAATCAGGACCATCCTGTCCGACACCGACACCGCGGAGATCCCGCCGGAGCAACACCTACACAACCGCCAGGTCATCCTAGACAACATCCAGTCCATGAAGACGAACATCGCGGAGATCCAGAGCTGTAAGCCCGGCCTGGTCCTGCCTGCGGGGGCGACGGCGGCGCTGGCGGTGTTCGACCGAGCCGAGGAGCTGCTGGTGCATTTGGAGGAGCTGGAGCACGAGACCCACCAGCAGAGCGCAGACCTCCAGATGGCGATTGACACGTTGGTGAGGCAGCGGCAGGACATAGACCCAGAGAGCCCCGGCCTGCCCTCCTCTGGACTCCCACCCAGCAACACCATCTTTGGTCGGGCACCGCCCCCCCTGAGAGACACTCAGGTCAATGTGACCCTCAGCCTGGAGGCCACGGAGGAGGTCCGAATGGGTTTGCAGGACCCATTCATAGCCCTGACAGAGACGCCGCCGTGGGAGGACAGAGCCCGGGACAGACGAACGCACACACagGGAGCGGCGCCGTGGGGTCGTGTGGACGGGCGTCTCTGCTTGGAGAGAGAGCTGGGCAGCGAGGACGATGCCGGGGGCAGCGAGTCGTCTTCTGAGACGCTGACCGGCAGCGTCCCGGAGGACCCTGACGAGACGTTCATCGCCGATGTCCGTGCTGGCGCCGTGCCCCTGACCCTGGGCAGCGACGAGGTGTTCGAGGCCCGGCCCATTCCCGGTACCGAGggAGCTGCAGAGGTCCAGCCCGCAGTGATTGAGACGGGGGCCCGACCCGGCTCCACAGTGGCAGTGACCGAGACAGATGCCCTGCCCGGCGCCACAGTGACCGAGACCGAGGCCCGATCCAGCCCCACAGTGACCGAGACAAAGACCAGGCCCAGCTCCACAGTGGCCGTGACAGACACAAAGGCCCGGCCCGATCCCACAGTGACCAAGACAGAGGTCCGGCCCAGCCCCAGAGTGACCGAAACAAAGGCCCGGCTCGTTCCCATAGAGACCGAGACAAAGGTTCGGACCAGCTCCACAGGGACCGAGACAATGGCTTGGCCTGGCTCCACCATGGCAGTGACCACGACAGAGGTTCAGCCCGGGTCCACCATGGCAGTTACCAACACAGAGGTCCAGCCCGGCTCCACTGTGGCAGTGACCAATACAGAGGCCCAGTTCGGCTCCACAGTGACCAAGACAGAGGTCCGGCTTGGCTCCAAAGTGACCCAAACAAAGGTCCAGCCCGACCCCACAGTGACCGAGACAGAGGCCCGGCCCAGCTCCACAGAGACTGAGACAAAGGCCCGGCCCAGCTCCACCATGGCAGTGGCCAAGGCAGAGGTCCAGCCCAGTTCCACAGTGACCGAGACAGAGGTCCAGCTTAGATCCACAGTGACCGAGACAGAGGTCCAAACCGACCCCACTGTGATCGAGACAGAGGCCCAGCCCGGCTACACTGTGACCGAGACAAAATCCCGACCGGTCTCTACAGTGACCGCGACAAAGGCCCGACTTGGTTCCACAGTAACTGTGACAGAGGTCCAGCCCGGCTCCACAGTGACTGAAACAAAGGCCCAGTCCAGCTCTATAGTGACCAAGACAGAGGACTGGTCTGGCTCCACAATAGAGGCCCGGCCTGGACCCAAAGAGACCAAGAGAAAGGTCCGGCCTGACTCCACCATGGCAGTGACCAAAACAGAGGTCCAGCCTGGCTCCACAGTGACCGAGACAGAGACCCGGTCCGGCCCCATAGTCGCAGTTACCAAGACAGAGATCCACCCCGGCCCCACAGTGACCGAAACAAAATCCTGGTCCAGCTCCACAGTGACCGAGACAAAGGACCGGTCCAGCTCCACTGTGACAGTGACTGATACAGGAGCCCGACTCAAACCCACAGTGACAGTAACCAAGACAGTGGTCCAGTCTGGCTCCACAGGGACCGAGACAGAGGTCCAACTTGGATCCACAGTAACCGAGACAGCGGTCCAGTCCGGTCCCACAGTGGCAGTTACCAATGCAGAGATCATCCCCGATCCCACAGAGACTGAGACAAAGGCCTGGCCCAGCTCCACCATGGCAGTGACCGAGACAGAGGTCCAGCCCGGCTCCACAGTGACCGAGAAAAAGGACCGGGCCAGCTCCACAGTAACTGAGATAGAGGCCCGGCCTGGACCCAAAGAGACCAAAACAGAGGTCCAGCCCGGCTCCACAGTGACCGAAACAAAATCCCGGTCCAGCTCCACAGTGACCGAGACAAAGGACCGGTCCAGCTCCACTGTGACAACAGTGGTCCAGTCTGGCTCCACAGTGACCGAGACAGAGGCCCGCCCTGCCCCCACAGTGACTGAAACAAAATCCCGATCCAGCCCCACAATGATTGAAATAGCGGCGCAGCCCAGCTCCACAGTGACCGAGACAGAGGTCCAACTTGGATCCACAGTGACCGAGACAGCGGTCCAGTCCGGCCCCACAGTGGCAGTGACCAAGGCAGAGATCATCCCCGATCCCACAGTGACCGAGACAAAGACCCGACTTGGTTCCACAGTAACTGAGACAGAGGTCCAGCCCGGCTCCACCGTGGCAGTGACCAAGACAGAGGTCCGGCTTGGCTCCACAGTGACTGAAACAAAGGCCCAGTCCAGCTCCACAGTGACCGAGACAGCGGTCCAGTCCGGCCCCACAGTGGCAGTGACCAAGGCAGAGATCATCCCCGATCCCACAGAGACTGAGACAAAGACCCGACTTGGTTCCACAGTGACTAAGACAGAGGTCTGGCCCGGCCCCACAGTGACAGTGATCGAGACAGAGGTCCAGCCCGGCTCCAAAGTGACAGTGACGAAGACAGAGGCCCGACCCGGCCCCACAGTGACCGAGACAGAGGCCTGGTCCAGCTCTATAGTGACCGAGACGGAGGCCCGGTCCAGCTCTATAGTGACCGAGACAGAGGCCCGGTCCAGCACACAGCCCCCTCAGCACAGCATGGTAAGTGTCTCACCCCCCACATCTGAAATCACTTCATTGACCCAGTTGTTTGGTTTCATGACTTACTCATCATGTTCGCTGACCTTTACCCAGCAGTCCAGTACAGGCCGTGTAGAAACACTGTACTTTGACCCGACACCGCAGTGCTGTGTTCAGAGAGCACCGGTCAGCTCCAGATGTGAATCACGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000596 True 4584 mRNA 0.63 17 18928666 18947466

Neighbor

gene id symbol gene type direction distance location
AMCG00000594 NA coding upstream 5641 18886448 ~ 18923025 (+)
AMCG00000587 rhoj,LOC107707080,LOC108257930,LOC107701469,LOC107743974 coding upstream 103988 18808614 ~ 18824678 (+)
AMCG00000569 NA coding upstream 238571 18678797 ~ 18690095 (+)
AMCG00000568 NA coding upstream 250552 18660117 ~ 18678114 (+)
AMCG00000578 NA coding upstream 269729 18654633 ~ 18658937 (+)
AMCG00000595 NA coding downstream 2692 18950158 ~ 18991317 (+)
AMCG00000593 btbd6,btbd6b,LOC107718408,LOC106571711,LOC107701487,LOC107560384,LOC107755235 coding downstream 339707 19287173 ~ 19289424 (+)
AMCG00000605 srp54,LOC107729255,LOC107693187 coding downstream 435466 19382932 ~ 19387617 (+)
AMCG00000604 sec23a,LOC107689296,LOC107589610 coding downstream 444308 19391774 ~ 19409778 (+)
AMCG00000606 NA coding downstream 472322 19419788 ~ 19444709 (+)
G151226 NA non-coding upstream 7300 18919921 ~ 18921366 (+)
G151219 NA non-coding upstream 60622 18863024 ~ 18868044 (+)
G151217 NA non-coding upstream 69202 18859263 ~ 18859464 (+)
G151052 NA non-coding upstream 543620 18384600 ~ 18385046 (+)
G151050 NA non-coding upstream 568374 18359247 ~ 18360292 (+)
G151310 NA non-coding downstream 183159 19130625 ~ 19130890 (+)
G151339 NA non-coding downstream 357780 19305246 ~ 19307462 (+)
G151535 NA non-coding downstream 1101950 20049416 ~ 20049648 (+)
G151538 NA non-coding downstream 1169032 20116498 ~ 20116788 (+)
G151540 LOC103376870 non-coding downstream 1205649 20153115 ~ 20153540 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 363039 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 397909 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 509090 18411443 ~ 18419576 (+)
G150976 NA other upstream 769345 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 1169084 17748510 ~ 17759582 (+)
G151522 gpr135,LOC107564991 other downstream 1021873 19969339 ~ 19972015 (+)
G151676 NA other downstream 1894472 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 2579404 21526870 ~ 21533538 (+)

Expression


Co-expression Network