AMCG00000622 (jkamp,LOC106611187)


Basic Information

Item Value
gene id AMCG00000622
gene name jkamp,LOC106611187
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19979178 ~ 19980678 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000622
ATGCAGAAGATCTGCCAGAAGTGCACCGAGTTCCCCGAGCTCTACGACTGGCTGTACCTGGGCTTCATGGCCATGCTGCCCCTCGTGCTGCACTGGTTCTTCATCGAGTGGTATTCTGGGAAGAAGAGCTCCAGCGCCCTGTTCCAGCACGTCACCGCGCTCCTCGAGTGCAGCGCCGCGGCCCTCGTCACCCTGCTGGTGAATGACCCCGTGGGCCTCCTGTCCATCCGCTCCTGCAAGGTCCAGATGCTGTCGGACTGGTACACCATGCTCTACAACCCCAGCCCGGACTACGTCACCACGCTGCACTGCACCCAGGAGGCCGTCTTCCCCTTGTACACGAtcgtgtttatttattatgctttCTGCCTGGTGTTCATGATGCTGCTGCGGCCCCTGCTGGTGAAGAAGATCGCCTGTGGCCTTGGGAAGTCGGACCGCTTTAAGAGCATCTACGCCGCGCTCTACTTCTTCCCCATCCTGACCGTCCTGcaggcggtggggggggggcttctCTACTACGCTTTTCCATACATTATCCTGGTGCTGTCACTGGTGACCCTGGCCGTCTACATGTCCGCTTCGGAAATACAGTCCTTTAAGAGCCTCGTGGCCAAGAAGAAGCGGCTGGTGGTGCTCTTCAGCCACTGGCTCCTCCACGCCTACGGCATCATCTCCATCTCCAGGCTGGACAAGCTGGAGCAGGACCTGCCTCTGCTCGCCCTGGTGCCGGCGCCCGCGCTCTTCTACCTGCTGACCGCTAAGTACACCGAGCCCAACCGGATCTTGTCCGAGGGGGGGAACGGGCACTGA

Function

symbol description
jkamp Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within response to unfolded protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human JKAMP (JNK1/MAPK8 associated membrane protein).

NR:

description
PREDICTED: JNK1/MAPK8-associated membrane protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000622 True 813 mRNA 0.60 5 19979178 19980678

Neighbor

gene id symbol gene type direction distance location
AMCG00000621 daam1,LOC106601075 coding upstream 11515 19931968 ~ 19967663 (+)
AMCG00000614 NA coding upstream 173979 19796784 ~ 19805199 (+)
AMCG00000620 irf2bpl,LOC106602196,LOC106611240 coding upstream 305283 19664561 ~ 19673895 (+)
AMCG00000616 NA coding upstream 335833 19624419 ~ 19643345 (+)
AMCG00000617 psma3,LOC107729246,LOC107725600 coding upstream 364298 19610030 ~ 19614880 (+)
AMCG00000626 NA coding downstream 569381 20550059 ~ 20570923 (+)
AMCG00000637 NA coding downstream 705407 20686085 ~ 20694291 (+)
AMCG00000634 cdc42bpb,LOC107684799 coding downstream 723010 20703688 ~ 20734204 (+)
AMCG00000648 NA coding downstream 828479 20809157 ~ 20810026 (+)
AMCG00000643 NA coding downstream 855901 20836579 ~ 20838280 (+)
G151339 NA non-coding upstream 671716 19305246 ~ 19307462 (+)
G151310 NA non-coding upstream 848288 19130625 ~ 19130890 (+)
G151226 NA non-coding upstream 1057812 18919921 ~ 18921366 (+)
G151219 NA non-coding upstream 1111134 18863024 ~ 18868044 (+)
G151217 NA non-coding upstream 1119714 18859263 ~ 18859464 (+)
G151535 NA non-coding downstream 68738 20049416 ~ 20049648 (+)
G151538 NA non-coding downstream 135820 20116498 ~ 20116788 (+)
G151540 LOC103376870 non-coding downstream 172437 20153115 ~ 20153540 (+)
G151557 NA non-coding downstream 558394 20539072 ~ 20602476 (+)
G151661 NA non-coding downstream 830772 20811450 ~ 20812290 (+)
G151522 gpr135,LOC107564991 other upstream 7163 19969339 ~ 19972015 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 1413551 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 1448421 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 1559602 18411443 ~ 18419576 (+)
G150976 NA other upstream 1819857 18153864 ~ 18159321 (+)
G151676 NA other downstream 861260 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 1546192 21526870 ~ 21533538 (+)

Expression


Co-expression Network