AMCG00000657 (scfd1,LOC107697716,LOC107719485)


Basic Information

Item Value
gene id AMCG00000657
gene name scfd1,LOC107697716,LOC107719485
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21477919 ~ 21507190 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000657
GTGATTCCCAAACAAGATGGCGGCGTCCGTGCGGGAGAAGCAGACAGCTGCTCTGAAGCGGATGCTGAATTTTAACGCTCCTCCTTTGAAGAACAGCTCATCGGAGCCAGTATGGAAGGTCCTCATCTACGACCGGTTCGGCCAGGACATCATCTCCCCACTGCTGTCGGTCAAGGACCTCAGAGACATGGGCATGACTTTGCACCTGCTACTGCACTCGGACCGAGACCCGATCCCCGATGTCCCAgccatttattttgtcatgcCGACGGAGGAGAATATTGACCGGATATGCCAGgatcTGAGGAACCAACTCTACGAGTCCTACTACCTGAACTTCATCTCTGCGATATCGAGGAGTAAACTAGAGGACATCGCAAGCGCAGCGCTGGGGGCCAACGCGGTGACGCAGGTTACCAAGGTGTTCGATCAGTATTTGAACTTCATCACACTGGAGGACGACATGTTTGTGCTCTGCAATCAGAACAAGGAGCTCATCTCGTACCACGCCATTAACCGGCCAGACATCATGGACACTGACATGGAAGCCATAATGGACACCATCGTGGACAGCCTCTTCTGCTTCTTCGTGACTCTGGGTGCTGTGCCGATAATCCGCTGCCCCCGAGGGAACGCGGCAGAGATGGTAGCAGTGaAACTGGACAAGAAGCTCCGTGAGAACCTGAGAGACGCCCGGAACAGCCTGTTCACTGGGGACACCATGGGCACCGGACAGTTCAGGGTGAACCTGGAGGAGTCCTCCGGGCCCGAGGCCTCCCCCGCCGGCGCCCGGcccaagaagaagaacaagaaaaccTATGACCTGACCGCCGTCGACCGGTTCTGGCAGAAACACAAGGGCAGCCCATTCCCAGAGGTCGCCGAATCGGTCCAGCAGGAGCTTGACACGTACCGGGCCCAGGAGGACGAGGTCAAGCGCCTGAAGAGCATCATGGGCCTGGAGGGAGAGGATGAAGGAGCCATCAGCATGCTGTCCGACAACACGGCCAAGCTCACCTCGGCCATGagCTCGTTGCCCGAGCTGCTGGAGAAGAAGAGGCTGATCGATCTTCACACGAACGTGGCGACGGCAGTTCTGGACAACATCAAGACTCGGAAACTCGACGTGTACTTTGAGTACGAAGAGAAGCTGATGAGCAAAAGCACCCTTGACAAGTCTCTGCTGGACATGATCAGCGACCCGGATGCTGGGACTCCAGAGGACAAGATGAGACTCTTTCTGATTTACTACATCACTGCACAGCAGCCCCCTTCTGAGGCGGACCTGGACCAGTACAAGAAGGCCCTGATGGACGCCGGCTGCAACCTGTCTCCCCTGAACTACATCAAGCAGTGGAAAGCATTCACCAAGATGGCGGCAACCCCGGCCAACTATGGGAGCAGTGGAGCCAAGACTCTGGGccTGTTTTCCAGGGTCATGAACACGGGCTCTCAGTTCGTCATGGAAGGGGTGAAGAATTTAGTCCTGAAGCAGCATAACCTGCCCGTGACTCGCATCCTGGACAACCTGATGGAGATGAAGTCCAACCCGGAAACCGATGACTACAGGTACTTTGATCCCAAAATGCTACGTGGCAGTGAAAGCTCCATCCCCAGGAACAAGAATCCGTTCCAGGAGGCAATTGTGTTTGTGGTGGGTGGAGGCAATTACATCGAGTATCAAAACCTGGTCGACTACACAAAGGCCAAGCAGGGCAAGCGCGTGCTGTACGGCTGCAGCGAACTCTTCAACGCCTCTCAGTTTCTCAAACAGTTATCTCAACTTGGACAGAAATAGGAGACGGACGAACACAAGCGTGCGTCCTCCGGGATGTTTCGCTTTATGGACAGTTTGGACTAACCATCTACGCCACCCTTCCCACAGAGCCGCCCTGGTGAGGCTGTAGCGCCTGGGTCAGCGCTCCTCCACTCCTTCGATAGTTTCTAAAACTCGCTCTTTCAACCCCTTTGCTTGATTCCATTTCTGTCCACGTGACGCAGATGTATTAACCGCCCTGCGACGTCTTCTGATTTACCCTGCATTCCTTTCTTACAAACTTGAGGCTCAGAGGTTTATTTATCCGGGGGAAACGCACAGGATGTCCTGGGACTTGATGAAGGACTAGTTATACAGACTCGGATAAACATTTCTACTTTCTGGGCTTGTCCCCTCTGCCCGTGTTCGACTCGACGCCTTCCTCTGTTCCTCTGACGTGTCCGTGTCTCTGCTGTGACCGTGTCGGTCCTGACGGAGCTGCCTTGTCTCTCTGAGGGTCtttacagctgtgttttctgGGAACCAAAtcaaaatccattaaaatgtgtaacaatTGATTTTATTAGCCTGAGAGTGGAAGTAAGAGGCTCGGCTTAAGGCATGAGACTTAAAGAGACGCAAATAATTCCCATCGTTGGTTCTCTCAGCTCCTGAACTTCTCGCCTGGTTCCCACTCTGTTATCTGTTGCTCGATGCAATGTCTCAATAAACAGTTAAATACTATCGCCTCCTGTGGCTTCCTTACCTCTTGAGATGTTAGAAACAATAATTTTCTTTGAGGTTTaatgtaactgtatttttgtatttatttattatttattattaacaccTCTGTTCAAACACAGAAGACCATAGTCTTCTAGTAAACGTAACCCTGATCGTCACTTTCTCAACCCCCCGGGGTGTCAAAGACACTTT

Function

symbol description
scfd1 Predicted to enable syntaxin binding activity. Acts upstream of or within several processes, including fin regeneration; glycoprotein transport; and skeletal system development. Predicted to be active in Golgi membrane and cytosol. Is expressed in digestive system; head; myotome; notochord; and pharyngeal arch. Orthologous to human SCFD1 (sec1 family domain containing 1).

NR:

description
PREDICTED: sec1 family domain-containing protein 1

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0031101 fin regeneration biological_process

KEGG:

id description
K19998 SCFD1, SLY1; sec1 family domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000657 True 2695 mRNA 0.52 24 21477919 21507190

Neighbor

gene id symbol gene type direction distance location
AMCG00000649 NA coding upstream 501 21469843 ~ 21477418 (+)
AMCG00000641 foxg1,LOC106611199 coding upstream 237989 21238713 ~ 21239930 (+)
AMCG00000654 NA coding upstream 556522 20920718 ~ 20921397 (+)
AMCG00000650 NA coding upstream 560774 20879319 ~ 20917145 (+)
AMCG00000642 ehd4,LOC107733091,LOC108430677,LOC105023592 coding upstream 608181 20855091 ~ 20869738 (+)
AMCG00000658 NA coding downstream 2184 21509374 ~ 21514322 (+)
AMCG00000659 NA coding downstream 9452 21516642 ~ 21526478 (+)
AMCG00000660 ap4s1,LOC107582370,LOC107733114 coding downstream 51323 21558513 ~ 21565648 (+)
AMCG00000671 nubpl,LOC107719449,LOC107561549,LOC107697759 coding downstream 129560 21636750 ~ 21650005 (+)
AMCG00000662 arhgap5,LOC106611209 coding downstream 176425 21683615 ~ 21687385 (+)
G151752 NA non-coding upstream 336459 21141186 ~ 21141460 (+)
G151709 NA non-coding upstream 558519 20918699 ~ 20919400 (+)
G151708 NA non-coding upstream 559381 20917942 ~ 20918538 (+)
G151706 NA non-coding upstream 560049 20917150 ~ 20917870 (+)
G151702 NA non-coding upstream 607508 20870184 ~ 20870411 (+)
G151782 strn3,LOC106611207,LOC107590905 non-coding downstream 29041 21536231 ~ 21542398 (+)
G151804 NA non-coding downstream 88648 21595838 ~ 21598156 (+)
G151676 NA other upstream 634456 20841938 ~ 20843463 (+)
G151522 gpr135,LOC107564991 other upstream 1505904 19969339 ~ 19972015 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 2912292 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 2947162 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 3058343 18411443 ~ 18419576 (+)
AMCG00000661 NA other downstream 19680 21526870 ~ 21533538 (+)

Expression


Co-expression Network