AMCG00000658


Basic Information

Item Value
gene id AMCG00000658
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21509374 ~ 21514322 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000658
ATGGGACAGGGGCTGATGGACAGCTACAGCATGGACCTCCACAACCGGACCGTGTACCGGGTCTCCGAGGACGGCGAGACGGCCATCGGCATCTATTTAATTACTCTGGGCTGGCTGTCCTGGGTGGGGAACGGAGTCGTCATCTTCCTCCTGTCCAAGCAGAGACGCGTCCTGGAGCCGCACGACTATCTCACCTTCAACCTGGCCGTCTCCGACGCCAGCATTTCCATATTCGGATACTCGAGAGGCATCCTGGAGATCTTCAACGTGTTCAGGGACGACGACTTTCTGATCAAGAGTATCTGGACCTGCAAGGTGGACGGGTTCCTAATCCTGCTCTTCGGTCTGATCAGCATCAACACACTGACAGCCATCAGTGTCATCCGATACATCAAAGGATGTCAGCCTCACCAAGccTACAGGATCAACAACTGCAGTGTGGCGCTGGCCATCGTGGCCGCCTGGCTCTGGGCTCTGTTCTGGGCCGGAGCTCCTCTCCTGGGCTGGGGCAGCTACAGAGCCCGCAAGTACGGGACCTGTGAGATTGACTGGGCCCGGGCCAGGCACTCCCTGGACTATAAGTCCTACGTGGTCGGCATCTTCTTCTTCAACTACTTCATCCCGGTCTTCCTCATGGTCTTCTCCTACTCGTCGCTCATCCGCAGCGTCAGGTCCAGCCACAAGTCGACGCGCGGGGACGAGATCAGCGAGCGGCAGAGACGCATGGAGCGCAGCGTCACTCGGGTGTCCTTTGTGGTGTGCACTGCCTTCATCCTGGCCTGGTCTCCCTACGCCGTCATCTCGTTGTGGTCGGCCTGGGGCTTCCAGGCGCCCCCCCTCGCCAGCGTCCTGGCCAGCCTGTTCGCCAAGTCTGCCAGCTTCTACAACCCGCTCATCTACATGGTCATGAGCACCAAGTTCCGGCGGGACCTGCAGGCGATGCTCCGCTGCCTCTGGGGCCCTGGGCCGGCCAGCGCCACGCCCCACCTCCAGACGCCGGTACGGGCCGGGCAGCAGGGGGCGCCGGCCCAGCCCGAGCAGGTGCAGATCGCCGTGGAGGGGGACAGGAAAGATGGCCAGCCGGTGCCGGACAGTGGCGACTCGGGGGTGGACACGGGCAACCAGAACAGCCCTGCGGAGGTCCAGTCCGCTCCCCATCTGAACCACAACCACTTGACCTGCAGACCCTTTCTGAGGAAGCCCAGCGACTCCGGACGCCTCTGA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000658 True 1224 mRNA 0.62 6 21509374 21514322

Neighbor

gene id symbol gene type direction distance location
AMCG00000657 scfd1,LOC107697716,LOC107719485 coding upstream 2184 21477919 ~ 21507190 (+)
AMCG00000649 NA coding upstream 31956 21469843 ~ 21477418 (+)
AMCG00000641 foxg1,LOC106611199 coding upstream 269444 21238713 ~ 21239930 (+)
AMCG00000654 NA coding upstream 587977 20920718 ~ 20921397 (+)
AMCG00000650 NA coding upstream 592229 20879319 ~ 20917145 (+)
AMCG00000659 NA coding downstream 2320 21516642 ~ 21526478 (+)
AMCG00000660 ap4s1,LOC107582370,LOC107733114 coding downstream 44191 21558513 ~ 21565648 (+)
AMCG00000671 nubpl,LOC107719449,LOC107561549,LOC107697759 coding downstream 122428 21636750 ~ 21650005 (+)
AMCG00000662 arhgap5,LOC106611209 coding downstream 169293 21683615 ~ 21687385 (+)
AMCG00000665 NA coding downstream 173793 21688115 ~ 21701292 (+)
G151752 NA non-coding upstream 367914 21141186 ~ 21141460 (+)
G151709 NA non-coding upstream 589974 20918699 ~ 20919400 (+)
G151708 NA non-coding upstream 590836 20917942 ~ 20918538 (+)
G151706 NA non-coding upstream 591504 20917150 ~ 20917870 (+)
G151702 NA non-coding upstream 638963 20870184 ~ 20870411 (+)
G151782 strn3,LOC106611207,LOC107590905 non-coding downstream 21909 21536231 ~ 21542398 (+)
G151804 NA non-coding downstream 81516 21595838 ~ 21598156 (+)
G151676 NA other upstream 665911 20841938 ~ 20843463 (+)
G151522 gpr135,LOC107564991 other upstream 1537359 19969339 ~ 19972015 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 2943747 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 2978617 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 3089798 18411443 ~ 18419576 (+)
AMCG00000661 NA other downstream 12548 21526870 ~ 21533538 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012169 opn6b coding NC_007128.7 CM002901.2 28760586 ~ 28770800 (-)
grasscarp (Ctenopharyngodon idella) G380387 NA non-coding CI01000189 null 1810636 ~ 1812199 (+)