AMCG00000659


Basic Information

Item Value
gene id AMCG00000659
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21516642 ~ 21526478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000659
ATGTCTCTCGAAGACAAAAGTGGCACCATTTCACATGAGGGCCCCTGCCTTGCCTGCGGAGCGGCTGCTGCTGCATTCGAGACGGGTCGAGCCAAAACCAGCCTCCATGTGTGCCGTCGCGCCGTCATGTGTGTGCTCCTCCTGCTGGGTGTCCTGTCCGCAGTGTCGGCGGCGCTGGGCTCGGGTGTGGACAGCCCTGTGCGCGTCACCTGCGGGACACTCGGGACTCATCTGCAGCGGGAGCGCGTGCTCGTGCGCTGTCCCGTGTGCGACCCGGGCGCGCTGCGCGTGTACGGTGGCAGCGGGTACGCGCTCATGTCCAGCATCTGTGGAGCCGCCGTGCACAGtgGGGTCATCACTCCATCAGGAGGCGTGCTGCAGTTCCAGAAACTTCCTGCCAGAAGCTCCTTCCTCGGGTCTCTGGCTCACGGGTTGGAGTCCCTGGATCTGCCCCGATGGAGCGAAGCCTTCTCCGTGAGCTGGGTCGAGCGACAGCCCATGGAGGTGTCCGACCAGCCCGCGCCCACGGCCACGCCCGGTGCAGCCAAGAAAGccctgaagaaaaacaacatgaagaAACTGCCCCCCAATGGAAACAAAGaCTGTCAGGTGGACGTTGCCCTGCTGCTGGACGGGAGCTACAACATCGGCCAGCGCCGCTTCAACCTGCAGAAGACCTTCGTCGGCAAGCTGGCCCACATGCTGCGGATCGGGCCAGAGGGGCCCCTGGTGGGGGTGGTGCAGGCCAGTGAAAACCCCAAAACTGAATTCTACCTGAAGAACTTCACGCAGCCCAAAGATGTGATTTTCGCCATTAAAGAGATGGGTTACAGAGGTGGAAACACCAACACAGGGAAGGCGCTGATGCACACGGTGCAGACGTTCTTCAGCGCAGAGAACGGGATGCGCAAGGGGGTGCCGCGGGTCATCGTGCTGTTCGTGGACGGCTGGCCCTCTGACGACATCGAGGCGGCGGCCACGCTGGCCCGGGAGTCGGGCATCAATGTGTTCTTCGTGTCAGTGGCGAAGCCTGCGGCAGAGGAGCTGGGGATGGTGCAGGACCGCGGCTTCGTGCAGAAGGCCGTGTGCCGAGACAATGGCTTCTTCACCTACTTCATGCCCAGCTGGTTCAGCACCAACAAGTACGTGAAGCCGCTGACACAGAAGCTGTGCGATGTGGACAAGATGCTCTGCAGCAAGACCTGCTACAACTCGGTCAACATCGGCTTCCTGATTGACGGCTCCAGCAGCGTGGGGGACAACAACTTCCGCCTGGTGCTGGAGTTCATCGCCGGCGTGGCGCAGGCTTTCGAGATCTCTGATGCGGGCGCCCGCATCGGTGCCGTGCAGTTCACCTACGAGCAGAAGGTGGAGTTGAGCTTCCAGCAGAGCACGGGCAAGGAGGTTGCGCTCCGCGCCATCCGCGGCATCCCCTACATGAGCGGCGGCACGGCCACCGGGGACGCCATCCTCTTCACCATCAGCCAGCTGTTCGGCACGCACCGCGGCAGCTCCGGCAAGAACTTCCTGGTGATCATAACGGACGGGCAGTCGTACGATGACGCAATGGCCTCTGAGCCCAAGGACACCCACACGTTCTTCACGCGTGAGTTCACTGGCCTGCAGCCGTTCGTGCAGCCCATCGTCCGGGGGATCTGCAGGGACTTCACGGACGCCAACTGA

Function

GO: NA

KEGG:

id description
K23574 COCH; cochlin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000659 True 1683 mRNA 0.63 12 21516642 21526478

Neighbor

gene id symbol gene type direction distance location
AMCG00000658 NA coding upstream 2320 21509374 ~ 21514322 (+)
AMCG00000657 scfd1,LOC107697716,LOC107719485 coding upstream 9452 21477919 ~ 21507190 (+)
AMCG00000649 NA coding upstream 39224 21469843 ~ 21477418 (+)
AMCG00000641 foxg1,LOC106611199 coding upstream 276712 21238713 ~ 21239930 (+)
AMCG00000654 NA coding upstream 595245 20920718 ~ 20921397 (+)
AMCG00000660 ap4s1,LOC107582370,LOC107733114 coding downstream 32035 21558513 ~ 21565648 (+)
AMCG00000671 nubpl,LOC107719449,LOC107561549,LOC107697759 coding downstream 110272 21636750 ~ 21650005 (+)
AMCG00000662 arhgap5,LOC106611209 coding downstream 157137 21683615 ~ 21687385 (+)
AMCG00000665 NA coding downstream 161637 21688115 ~ 21701292 (+)
AMCG00000664 NA coding downstream 185212 21711690 ~ 21716183 (+)
G151752 NA non-coding upstream 375182 21141186 ~ 21141460 (+)
G151709 NA non-coding upstream 597242 20918699 ~ 20919400 (+)
G151708 NA non-coding upstream 598104 20917942 ~ 20918538 (+)
G151706 NA non-coding upstream 598772 20917150 ~ 20917870 (+)
G151702 NA non-coding upstream 646231 20870184 ~ 20870411 (+)
G151782 strn3,LOC106611207,LOC107590905 non-coding downstream 9753 21536231 ~ 21542398 (+)
G151804 NA non-coding downstream 69360 21595838 ~ 21598156 (+)
G151676 NA other upstream 673179 20841938 ~ 20843463 (+)
G151522 gpr135,LOC107564991 other upstream 1544627 19969339 ~ 19972015 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 2951015 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 2985885 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 3097066 18411443 ~ 18419576 (+)
AMCG00000661 NA other downstream 392 21526870 ~ 21533538 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_01794806_01800713 COCH coding CI01000189 null 1793958 ~ 1800713 (-)