AMCG00000660 (ap4s1,LOC107582370,LOC107733114)


Basic Information

Item Value
gene id AMCG00000660
gene name ap4s1,LOC107582370,LOC107733114
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21558513 ~ 21565648 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000660
ATGGGGGGCGACACGATTACTGAAGCCCTGCAACTGCCCCACACAGCACCCGCTCCCAGCCCGCAGCGGACAGTGTCAGTATCATCTGACCTGGATCAGGGCGGGAGCCCCTGGGTTTGCGACACCGGGGCAGAAACCGCCATCGCAACACAGCCCACTTTGCGCGCAGCCCCGGCCCGGGTCGGAGGAGTGCTCGGGCGGGCGGGCTTCACCTCCCCGAGGACCGTCCTGCACGGCGAGAACTGCGCTCTCGGGTCTCCGTCTGGATCTCCTGCTCTGCGCCTCGGCATCCGCGCCCGAGTCTCCCGGAGACGCCAGCTCCACACACCACAGGGGAAGCAGCGAGCGAACATGATCAAGTTTTTCCTGATGGTCAACAAGCAGGGCCAGACACGGCTGTCCAAGTACTACGAGCACGTGGACATCCAGCGCAGGAGCGCCCTGGAGGCCGACGTCATCAAGAGCTGCCTGTCCCGGACCAAGGAGGAGTGCTCCTTCGTCGAATACAAGGACTTCAAGCTCATCTACCGGCAGTACGTGGCGCTGTTTGTCGTGGTTGGGGTGGACGACACAGAGAACGAGCTCGCAGTGTATGAACTTGTACACAACTTCGTGGAGGTGCTGGACAAGTACTTCAGCAGAGTGATCATGTTCAACCTGGACAAAGTGCACATCATCCTGGATGAGATGATCCTGAACGGGCGCACTGTGGAAACGAACAAAAGCCGGATCCTGGCGCCGCTGCTGGCGCTGGACAAGATGGCGGAGAGCTGA

Function

symbol description
ap4s1 Involved in central nervous system neuron axonogenesis. Predicted to be located in membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in central nervous system. Used to study hereditary spastic paraplegia 52. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 52. Orthologous to human AP4S1 (adaptor related protein complex 4 subunit sigma 1).

NR:

description
AP-4 complex subunit sigma-1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12403 AP4S1; AP-4 complex subunit sigma-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000660 True 774 mRNA 0.61 7 21558513 21565648

Neighbor

gene id symbol gene type direction distance location
AMCG00000659 NA coding upstream 32035 21516642 ~ 21526478 (+)
AMCG00000658 NA coding upstream 44191 21509374 ~ 21514322 (+)
AMCG00000657 scfd1,LOC107697716,LOC107719485 coding upstream 51323 21477919 ~ 21507190 (+)
AMCG00000649 NA coding upstream 81095 21469843 ~ 21477418 (+)
AMCG00000641 foxg1,LOC106611199 coding upstream 318583 21238713 ~ 21239930 (+)
AMCG00000671 nubpl,LOC107719449,LOC107561549,LOC107697759 coding downstream 71102 21636750 ~ 21650005 (+)
AMCG00000662 arhgap5,LOC106611209 coding downstream 117967 21683615 ~ 21687385 (+)
AMCG00000665 NA coding downstream 122467 21688115 ~ 21701292 (+)
AMCG00000664 NA coding downstream 146042 21711690 ~ 21716183 (+)
AMCG00000666 NA coding downstream 181699 21747347 ~ 21753688 (+)
G151782 strn3,LOC106611207,LOC107590905 non-coding upstream 16115 21536231 ~ 21542398 (+)
G151752 NA non-coding upstream 417053 21141186 ~ 21141460 (+)
G151709 NA non-coding upstream 639113 20918699 ~ 20919400 (+)
G151708 NA non-coding upstream 639975 20917942 ~ 20918538 (+)
G151706 NA non-coding upstream 640643 20917150 ~ 20917870 (+)
G151804 NA non-coding downstream 30190 21595838 ~ 21598156 (+)
AMCG00000661 NA other upstream 24975 21526870 ~ 21533538 (+)
G151676 NA other upstream 715050 20841938 ~ 20843463 (+)
G151522 gpr135,LOC107564991 other upstream 1586498 19969339 ~ 19972015 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 2992886 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 3027756 18489851 ~ 18530757 (+)

Expression


Co-expression Network