G149001


Basic Information

Item Value
gene id G149001
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7955972 ~ 7956389 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187484
gattttgcctgtctctcctaaactgtgtgtatccttccaacttgtattcatccccatcattttctgtaagccatgtttctgtcactcctacaacatcatagtcacacgccagcactgtggcttccaagtctaacatcttgttccttatactcctggcattgaggtacaaacatttcaggactttcctactggcagtttcccttggttttctttccttagtggaacatctcccattgtcagagctccctgcccccctggttcctagtttaaatgattctcaatttcactgcacatacgtctcccaatgcattagccccccttctgtttagatgtagactgtccggtttgtacaggtcccatctatcccagaagaaagaccaatgctccataaacctaaacccctcttccctacaccaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187484 True 418 lncRNA 0.45 1 7955972 7956389

Neighbor

gene id symbol gene type direction distance location
AMCG00000238 NA coding upstream 69528 7871530 ~ 7886444 (+)
AMCG00000221 ino80,LOC107668207,LOC107739367,LOC107721325 coding upstream 215165 7702819 ~ 7740807 (+)
AMCG00000220 vps18,LOC106571062,LOC107739368 coding upstream 258841 7690570 ~ 7697131 (+)
AMCG00000235 NA coding upstream 281405 7663322 ~ 7674567 (+)
AMCG00000233 dcaf4 coding upstream 302644 7643721 ~ 7653328 (+)
AMCG00000232 meis2 coding downstream 152229 8108618 ~ 8120105 (+)
AMCG00000247 dph6 coding downstream 468195 8424584 ~ 8426636 (+)
AMCG00000248 NA coding downstream 485914 8442303 ~ 8457288 (+)
AMCG00000245 NA coding downstream 517185 8473574 ~ 8483697 (+)
AMCG00000250 NA coding downstream 563475 8519864 ~ 8525224 (+)
G148961 NA non-coding upstream 196375 7759369 ~ 7759597 (+)
G148919 NA non-coding upstream 271875 7683878 ~ 7684097 (+)
G148791 NA non-coding upstream 863512 7092025 ~ 7092460 (+)
G148768 NA non-coding upstream 1020812 6933300 ~ 6935160 (+)
G148764 NA non-coding upstream 1028718 6923294 ~ 6927254 (+)
G149055 NA non-coding downstream 627259 8583648 ~ 8584007 (+)
G149056 NA non-coding downstream 628099 8584488 ~ 8584967 (+)
G149059 NA non-coding downstream 712591 8668980 ~ 8673786 (+)
G149172 psmc6 non-coding downstream 1056982 9013371 ~ 9016151 (+)
G149253 NA non-coding downstream 1323674 9280063 ~ 9285151 (+)
AMCG00000217 gpx2 other upstream 593265 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 631521 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 659007 7290666 ~ 7296965 (+)
AMCG00000198 LOC106586563 other upstream 1435109 6500893 ~ 6520863 (+)
AMCG00000201 NA other upstream 1481740 6469345 ~ 6474232 (+)
AMCG00000251 NA other downstream 616547 8572936 ~ 8575124 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other downstream 623328 8579717 ~ 8585273 (+)
AMCG00000285 map4k5 other downstream 1483672 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 1558433 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 1605168 9561557 ~ 9591088 (+)

Expression


Co-expression Network