G149666


Basic Information

Item Value
gene id G149666
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11787093 ~ 11791091 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188344
gcCACAACATCTCCTCTCTCATCTACAGTCTGGAGATAACAGCATTAGAGTAATAGAGATCTTTATAAAAAGTAGTGTCTTTTTCCATAGAAAAACGGGCAGAAAGTGGAAACTGCCAtgtctttcaaaacataagaaaaacaaaaaatcaaatcattaaaggtatttacatttgtctttaacaagaaaagtatatatgtacacacaacAGCAGGGATTTAAGTATTtccttgattattattattacaaaccTCTATAGACACTTGGGGATATACCAGCTTGAACTTTATGAAAACTTCAAAGACAAAACGATGCAGGTAAACCACACATTTTCTTCCTGCAGTGTACAGTGCATCATCAGTCCTGGTTACTcaggtgtttttaaattgacaatATTTAGCTTTAGTCTgtaattttacacatttgttcaTTACACCCATGGTTATACGAGATACAAAATGTGGACAGCTGCTTGGTTAACCTGTCTAACCATTGGAAGGGTATTTGCATGGATTCAATGTTTttgtcaataaaatgaaaaaaataatatgcatacgGTTTGTTAAAAATTGCTTTGTACTAGGCACATGAGGGTTTTACACATAGGTTTCCAAGAAAAACCTGCTttttacaacaataataacagtctACTGAAAAAAGCTGGAGACATCCTACTACCTTGAAAGGCTGCTTCAGTTCAGACCATCAGATTTCAATGATCAAGTCTAgccaagtgttttgttttgacttcCATGCCATACTTTTCATATCACACTAACAAAAACATTCAGGAAACACCATCTTAAAAGTTTGTGGAAATGATGCTATGTTAAGCACATGACCGTTCTTCCCCCGATGAGCCCCAGTAGAAAATGACTAGCAAAGACGCCCGGTGCTAACATTGCGCGTTTGTAAATCTAACAGTAGTAGTGTTCTGGACTGTGGGAGAGCATTTCTAATTAGTCCTCAAGCACAGTGCTTACCCATGAAGGAAGAGGTAAAAGTTTAACAATGCAGAATTTAAACAGAGATTTATATCAAATGTAGGATTATTAAATCATATGATATTGACATAACtccaaatgcatgtatttaccAGTACACTGAACTTGAAGAACCACAGTTCAACCAAGGACAAAAAAGCCTTGAGTTGAAAAGCACACAGCCAACTTAAAGGCATCAATGGAGAAAGATGAAACAGGCTTACTTTGGCCAGATCTGTTATGTCAGTAAAATTGTATTGACAGGGCTAATCCTGAAATCCTAAAGGTTTTAATTCAACCACCCATGAAAATTATATTCCTAGATATAAATATAGTGTCTgcgtttttatttgtaaactgataaaaccaaaacatgttGAAATGAAATGGACACAACCAAAACTAAAAGTCCTGCTTTGAGACCACAATGGAAATTTGACCACCTATAACTGCACAGACGATAATGTATAAGCTGCAAAGGTGGTAGGCTTGCATTGTGAGAATCACATGTACAATAGGTATAATTATGACACTAACTCAAGACACTGGATTACGAGATATCATTGTGCCGTGCCTATATGTGGTGATGCTTTGGTCCTATTGTGGCCTCAAAGCAGGACATATATCATCTTGTTTGCATATTCTGTTCAAtaagaaatcaatgtttttatttctcatacATTTGGCCTTAAAATGTAGTAGAGGAATACCTTAATTACCATGTCTTTATATCTCTGTGCATCAGGTGTCCCATAAGTATAAGGAGCTTAGCTGACATTATACTTATTCTGACAAACACAAGGTCCCTGCTAACACTGCAGAATTCATTCCTCCTCTTATGAAACTGTTTCctcaaacatttacatttggaGATGAACAgacaaccacaaaacaaatgcattctaCATATTCATCTTAGTTTTTGATTACAGTAATAATGTTCTTCATTGACAAACCATCTGACCCATGGTTCTGTACTGGTAAATTCATACATTCAGTgggaattaaatacaaaactcCTCCATTATCAAAAGATAcacatataaaattaaatgtagagCAGCCCATTCATTGTGTACCACACAAGAACAGCTGCTGCCATTATCAGTAACACATGCTCTCTCCCTTCCATGGAGATACAAATCGTTTACTCAGTGATGCATGGGGAAGGTTTTACATGTTAAATTCTCTGAACTCATAGATGAATGCTCACAAAGCTGTTCCCTAAAAGGTCATTAAAAAATGACTACCCACCCTCTCATGATTAATATCCCAGGAGAGACACCATGCCCTTCTAAGTGTCCCTGTAAACCTAATCGCTGTAATTTGTAGTCCCTCAACATGCACAATATTGCTGTTAAGAAGTTTGTCCTCGGACAGTGCCTTCAATTACCCCAAATGGGTTCAAGACTGTCTATGTTTATATGCATGCCAAAAAAAGCAGAGATGCATCACCCCAATATGGGGACAAAGTCTCTGGAACCAAGAGTGCATGCAAAAGTGACACCTGGTACCAGAACTTCTACTTTTTTCTCTGTCTGCATCACAGGGTTATTAACGTGGCCTGTGATCAAACATGCTATAATAGATCTACCTCTTCCCCTGTAAGTAAGAAAAAGTCAGCATCTTCAAAATTATATCCTGGTCTCAGAGAAAACTAGATTCCTTACatatctgtttatatatttctttcccAATACTACACCTTTAAGAAATGAAATGGGGAGGGGAAATGTACTCCAGAAGGCCGCTCAGGGGCAGCACCTCACTTATTATTCAAAAGCAGCTAAGACAGTTGGTGCCTCCTACTGTACAAAAAAGACATTCTCCTTTGGATTTATGTTAGGCACATTAGGTAGTGCTTTTGGACAGactccataaataaatacaaattaacaagtctctcagaaaagaaaaaagctaacAAAACAGTTCTCCCTGATTTTGTTATTGATAAATTAGGAGGACTATGAGGAAAAGGACTGAGCACCATCCTTACTCAGATTAATGGGGGCCAATCCTTTCATCTGTTTAGCACTTGATGATGCACCATCTAGACAGGGGTTGCTGCTCACTTTCAGTCCAAGAGGAGCCAGCCTTGGCATAGGTCTCCAGGATAACTCGCTATCCTTACTGCTATCTTTAGAAGTGTCCACAGATGTGATGGCACTACCAGTTTTCATCTGGAGTAATGGGGGAGGCGTCAGGGAGTCTCCCTTGAGTGATGGGTTTGGACTCTGTTGATCATGGCCATTGGCCACTGTGCTACTTCTGGAGGGTGATCCAACAACCACATTTACAAGGTCACTTTCCCCTGCCTGTGGTTTGTCCTCATCATTCTGTGAATCCTTTGATTTATTGAGGTCCTCGTCCAGCTGTAAGAAGAGAGGGCTAAGTGCTCGGTCATCATCCTGCTCAGGCTCTTCCTCTCCCCGTTTGGagtcgtcctcctcctcctccacagaCATCTCTGTCTCATTCTTCTCCTGCAGGCTGCGATGGGCAAAGCGTGCCTGTGTGACACCTGCCCCCGAGCTGTCGTTATTCATCTGTTGGTTTAGAAACACAATCTCATTGAGAAGTGATGTCAAGGTTTCATCCTCTGGGTCCTCATCCTCATCAtcgtcctcctcttcctggCTTGAAGCCATGTCTACAACTGGGGAAATGGAGCCTTTTCCTCTGGTTCTACTACCCCTTTCGTCATCATCCAGGTCATCTACATCAGCTGCTTGTGCACTGAGGACTGGATGGGACAGATTTCCAGGCACCTCTCCTTCTTCCAGCTCCTCCTCTACCTTCCCATGCAGgactggaggagctggacaCCTCAAAACATCTCTCCTATCAAACTGGCTGGTGGGGGCTTGTCCTTCTTCAGGCTCCTGTTCTGTAACCAGGGGAGAGCCCACAGGCCGGAAGACATCCTGTTTCTCAGTTCTCCCAGCAGTATTCCCTGAGGACATCAGTGAGGTGACGTTGCTTATCTGCGGCATGTTCAAGACTTCACTCACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188344 True 3999 lncRNA 0.40 1 11787093 11791091

Neighbor

gene id symbol gene type direction distance location
AMCG00000324 jmjd7 coding upstream 52594 11732396 ~ 11734499 (+)
AMCG00000323 NA coding upstream 72475 11704595 ~ 11714618 (+)
AMCG00000326 NA coding upstream 98614 11685554 ~ 11688479 (+)
AMCG00000325 NA coding upstream 107395 11677153 ~ 11679698 (+)
AMCG00000327 NA coding upstream 112406 11672207 ~ 11674687 (+)
AMCG00000332 NA coding downstream 45702 11836793 ~ 11839680 (+)
AMCG00000353 NA coding downstream 75064 11866155 ~ 11886897 (+)
AMCG00000351 ivd,LOC107719458 coding downstream 243040 12034131 ~ 12041923 (+)
AMCG00000339 NA coding downstream 284965 12076056 ~ 12090893 (+)
AMCG00000340 rpusd2 coding downstream 370900 12161991 ~ 12169461 (+)
G149602 NA non-coding upstream 349274 11437369 ~ 11437819 (+)
G149595 NA non-coding upstream 418868 11338391 ~ 11368225 (+)
G149591 NA non-coding upstream 460542 11326186 ~ 11326551 (+)
G149587 NA non-coding upstream 563986 11222829 ~ 11223107 (+)
G149572 NA non-coding upstream 611027 11175662 ~ 11176066 (+)
G149667 NA non-coding downstream 780 11791871 ~ 11792096 (+)
G149668 NA non-coding downstream 2276 11793367 ~ 11794856 (+)
G149672 NA non-coding downstream 6284 11797375 ~ 11798007 (+)
G149673 NA non-coding downstream 8470 11799561 ~ 11799878 (+)
G149674 NA non-coding downstream 8909 11800000 ~ 11800740 (+)
G149525 LOC100846954,LOC107575789 other upstream 1251956 10534590 ~ 10535137 (+)
G149424 NA other upstream 1816292 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2196005 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2240682 9514822 ~ 9546411 (+)
AMCG00000285 map4k5 other upstream 2300404 9440061 ~ 9486689 (+)
AMCG00000352 NA other downstream 174464 11965555 ~ 11995026 (+)
G149859 NA other downstream 888579 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 1175786 12966877 ~ 13030853 (+)
G150069 NA other downstream 1899748 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 2342047 14133138 ~ 14153840 (+)

Expression


Co-expression Network