G149747


Basic Information

Item Value
gene id G149747
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12092387 ~ 12098372 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188432
AAATCCTGGAGCTTTTTATTATCCCCACCCTTATTTTGAATTTCTACTATGAATCAGAAACTGGTTGCTTTTGGATTGTAGGTAAgcagtgattttaaaatgcttctctACCAGAATTACTATGTCTTTTACTAGGGTCTGGTAGCCATCTGCGTACAATATTCTTCATGAGAGGAAGTTAAAAAATTAccacactttctttttcttaaactGAATTTCACAGATATGAGCTTCTCTTCTACACCTTTTTTGTGAGTGAGTTACACTTGGACTACATTTGTGCACGCAATGCTGTAGCAAGGTGTTTGTGAAGCAACACTTAAGTAGACAGTGACGTAGCTCTACTTTCAAAAGCAAGAATGAAATCCCGTTTTCAAACTGAGTGACACTGATAGActtggaaagaaacaaaacagtggtTTATTCTTTCTATCTGCAACCAAATGTTTCACTTttggtttttttctttttctttttcatatataGCCTTCGGATATCAAACCCATGGAAACAGACTTCTAGTCATCTCTGATAATAGGTAATCGTAAGACGAGTGTGGGTTGTGATTGGAGCTCTGCTGATTTGGCCGGGAATACAGTGTTCTTCAGATGTCCTGTACAGCAGAGTTTATTCCAGGACTGCATGTGTAGAGTCACTGGAATACAAGAAATCCATGTGTTCTTTGTACTTGCATACAAACGGATGTGTGACAGCCTCCAAATGCAGACCACCAGGGATGCTAGGAATTAAGTTAATACCAAACCGTTACGTTTTTATATTGGAGCCTTTATACTGGGATTTTTTCTTGGGTTGGGGAATGAGGAGATTGAGGAGATTGAAACCaatttgaataatgttttattgtgtgggGAACTACACACATTAATGTCAATAAtcgctttttttaaattatttttttataagtgTGCTTTACTTCTGATTCCTGTCCTATGAACCATGTAGTTCAATCATGTTTTGCTGTTAAGTGCAGCAGACTTACCAGACCAAATGTAAATTTCTGAAAGATCAATGAATTACCAttataaagattttatttgaagttgatatacaaaaatatcttTTGGCATTTTATAAAGAACAATGTAGGCTGTAATCTAGTCTTGACAATACAGACAAGGCCCtggacagacaaaacaaaacaaaaacaaaacaaaccatcaaaaaaaaggaaatgaaatctTTAACCCAGGGTACTGAATAATCTTAGATGCTTTTTAGCTCCCAGTCccctgatttaaatgtaaatatttaaaatctgagTGGCAAAACTGGGCATTTTCCAACCAAATCAAAATCACAGCATAGcatgtttgcattatttaaaagacagacctgtgtattataaaaacatcctacaaatggaataaataatatatgagtTTCAATTAAACTTATCTGCAGTAAGTCCTGATGAGAGAATTTCATGgtcatgaaaagtaattttgtttcctgcagtgtgtaatttacaattaaacatgtatttatttggtcttTTTCAGACGCACAATAGTACAGGCTGAAAATGAAGCCCATTCTATACTGTCATTTATGTCATCTGAAAAACGTTCTTTAGTAGTAATTTTCTTGGATAGTATTAATTACCcacaaccatttaaaaataataactgttagtataaacatttaatgttaaaattagCTTTACATCTACAGTTGATGATATTCCTTACTATGTAAAGCATGGATTTAGCATGTCAGCCATGTCATTAGAAATTGCTTTCGGCATTACAAATCATGTATCAACAAAGCACTTTCTCAAAGATCTTAAGCCAGTGTTTTcggttttgtttcttgtatttctttggTGTAAAGATACACTTGGGCACTGCTATCAGATTGTTTGTCTTggggagggagaaaaacaacCCACATTTCTAATGCGTTTCATTCCCCAGACTTGTGGACAGCCCCCCCGATAACGCACTCTTCTACATTATGATGCACACATTTGTCTTTTATATGAATTAAAAGGTTTGTATTCTTCTTGATTTGAGAGACTGGTAGGTGAATAAAACGTGAACATGAACCCCCTCCCAAGAAATATAACTAGATCTGATCTTACCAGTGGAGAAATATAAATCTGTTTGCCCTTGGTCATGGCTGGTGTAAATGcctgcatatatattttgtaatttaatcatGAGGAAAAAATGGAAACCAGTTATTTTGGAGTATATAgagtatatttgtaaatgtgttatatttaaatgctttgtCATGCTATCTGGGATTTAgcggacaaaaaaaaaaagaaaaaaaaaatgctgacagCTAGCATCCCTGCTGATTTACCTTTCAGGAGcttatttataaaactgaagggttttttcttctgtgaaacAAGGTTGcagttttcattatttcatttgagtgcctgttctttttttattttttaatctataggtttgtattttaagaaatggGGATTTTAAGTGCTTCATCCACAATGTAATTAGAAGCTCAGTTTGATTTAAACTGCTGCATGCTGTCCATAATAAATCCATCAActcaaatcatgtttttaaaacgtACACATCTTGCTTTTCCCCGATTGTGTCCGAAAGAGTTTAAACTAGTTTTTCTATCCGATGTTGCTCTCGCAGGTCATTCCAAACACAATCCAACATGCAGACTTGCACTATGAAGACTTGAACGTATTCACAGATCGTAGGCTATTTTATGTTACTCAAGAAAGTTCTGTGTAAAGTCAGTGTATTTAAAATTTGAGAgaattaaatagttatttagCCATACAATTTACCGTGTTAAAGTAGGTtacatgaaatgtgaaataaacattttaacctCATCCTTTTGCAGTCCCTTCCCAGTACTCGGTACACTGACCTGACATGCCCCTTCCAGTCCTGCAGCCCCGTGTCCTCACCTCGCCTCTCTCACTGCTCGCTGGAAAAGTATTAATCCGTAGGGCAGTGTATTTGCTGTGGATCAAAAGGTTGGGAAAAATTATAGTAACTcttttttcatgatttaattacatgttaaacaggacaaaataataaaggcCTTCACAAGAAACCTTTTGATTCTACGGCATTGACGTCCATTTGTATCCACTTTCAATTCAGGCATATGTAGTCACTGCACAGAGAAGGGAAAAACCTAACTGTTCCTCATAACAGGGCTATGAAGTTGTATGCGCTAAGGGAAATGCATACACTATTGAAGgctgcctttttttaaatgttaccgAAGAATGTAGTTgaagaggtgttttttttttttcattttcaaatccaCCATTGCCATGTAGGACACTTTTCAGTGAAACTCCGTAGTGAGTGTATGGAAAATCAAATTACCTTGCCCTCGAATACAGTTCTTCACATCTCAAAGTGTCCTAGCGATCCTAGTGCTTCAGCAGACCAGGTGTATGGCTCGCACGACTAACGATGGCAGGTCATGCTGCCGGGGGTGTGCTGTACCCGCTGCTGCAGGGTTTTACTGCAGTGTGGCCCCTCCGATCCATACTTCTGTATGTTGGCTTAATATCCTGGCTGAGTTCTGCTGAGCATTGAATCCGAGTGCACAACACGGCATCGTGAACATCAGTGTTCATGGCACAACAGGCCGACTCCTGCGCAGGCCGTCCATAAGCCCACCCTGTGAGGCACGAACCATGCAGTCAGTTCGAGCTGCTAAAGCAATGAATATACACTAAAGAGAACAGGACCCCAGCAGGAGAGATCTAGCACTCTGTCTGTGGATCCCCTGACAGGCCTTGAATTTTGGCCTTTATCTGCCACTGCCTTAACAAGGGTACTTGTCTTTAAAGAGTATGAATTGCTTGGTAGATTGCTGACTTTTTAAGATGTTTTCAATGCTCCCAAGTTCccgtttcttttctcttttttgacATTGGTCAGTTAAAGCTTTGTTCCATCTCTTACATGAATGAAACGTGATGCATGCTgactacattttttgtttttttgttttttgcttttagtttgcttttttccctcccttCTCTGCCTGGTTCTCCAGGACGTAGACCTGTTGTGGTGCATGTGGTAGCAGAGCACAGTGCTGAACTAAATGAAATAGGGCCTGTCTAGCTCATagttcagactttttttttatttccattttttttctcaggtTTGAATGTTTGCTCTCAATCCACCATTCTTTCCAGAAGTGAATTTCTTGTGACGAGTCACAGAAATCAGTGGGTATTACCtaaagactgaaaacaaacaggcaaactGTGTACTGCATTGCAAAAAGTGCCTAATTCAAGCCCCATTCAGCACCACACCACAGAGCAGTGTGTCACATACTGAAGAAAACAGGGTGTTCATTCAGACTTCCTCTGTAATTACACGTCTGCCTTGCCTTAAACACAGTTGCAAATCTTCCCAGACATTCTGGGACTCGTGCAGAACACGGGCACAAGCACACAGAACAAAAACCACAGTCAGGTTTTCTTGAGGTTTTAAGCTCAGTGAGATGTTTGTAGTGTTCGCAGAAAAAGTAACTGCATTTATACTGAGTTGCCACAGGGTGTCATGTGGGATCCATGTAACGACAGCCGCCGAGTCCTGCAGCAGAGTGTCTATCTGCTTTTTCGTAACTATTTAAATTTGAGAGAGGTGAATGGTTTATAAAAACTGTAAACCAACTTTGTGATATTGTTATCTTGCTTATGTTGAACAACTTGTGGGGTACATTTCTGTAGGGGACACTTACTAACATAACTTTCTTTAAAAGAAGAAAGTATGTAAAGACTTATCTGCTTAAAGCAACCCTCCCTCAATCGTGCATGTGTATTACATGTCCAGTGGTCCAGGTCAGTTGTCTTTCTGAAGAGACTGTATAAACCGTGACCAGTTATTACACGTTGTTAACGAATTCGGTGTTCTGGGACTCTCTGCTAAGACAATTACACACAATCGTTTCCCTTAAAGCCTGCTGCAGCCCTACTAATTAACCCTTATTAATCCCCCCCAACAAAACCTGGTTACATACCTCCAGACCATCTGTTTAAACAATGGCAAACTTTGCATAGGTGAGATCTTTGAACAGTTTGACTCTTAACCGCCTCGACAATCATTTTTTcgtattttgatttgatttgatttgattatttatttatttacagggatccttgcagtattttattattgaccGTTTTACACTTGCTTGCCCCTCAGAGTGGCACACTTAAATTTCCCTTGTCTGGGAGGGCTGCAGAAAAGCATCATATTTGGTGGGTTTTGGCTTTCAGTTGTGTAATTGTGGAAGAGAGGGACGGCTCCAAAAGCCCTTCAGAATGATTGATGCAAGGGcctttcttatttcttttttatttgtttgtttgttttgtttttctatgatCTGTGCTTATCATACTTTCCCCTAAACATAAGTGTCCCAAAGACCTAAATGTGTAACGAttttaagctgtttttacataatatattaacaatCATTTTCAGCATTGATGGGCTATGAGTAGGGAATGTAGTCATTAATTGATAAGTAATCGTAGAGAACATGCAAATGCAGGTGTTAAATTATATAcgtgtattaaaacaaaaacttgttgGTGATGTGCAGGTTCATCCGATAACCCGTTTTCTTTCTTGACTGATTTTTATATCTTTTTAACAGTGATTTCTTGTATATGCACTTTCTTTTCAGCCCCCTTATCAAATGCCCTTTCCCCCCGTGGCCAGGTCTGAGTGTTTACAAGTGGAATGAGAGACATTCCagaatattcttttttttttttttttcttttgggggcatacaaaataaatctgcaaatgtaacacataaaaaaagtacattttaaaggtgaaaatggaagtgtattgattttagaaggaaaaaaatatatatgttttgattGAACTTGAATcctgtttctgctgttttttgtttttctccttacAAAAGCTTCCAGTCAGCAGCTATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188432 True 5986 lncRNA 0.38 1 12092387 12098372

Neighbor

gene id symbol gene type direction distance location
AMCG00000339 NA coding upstream 1494 12076056 ~ 12090893 (+)
AMCG00000351 ivd,LOC107719458 coding upstream 50464 12034131 ~ 12041923 (+)
AMCG00000353 NA coding upstream 205490 11866155 ~ 11886897 (+)
AMCG00000332 NA coding upstream 252707 11836793 ~ 11839680 (+)
AMCG00000324 jmjd7 coding upstream 357888 11732396 ~ 11734499 (+)
AMCG00000340 rpusd2 coding downstream 63619 12161991 ~ 12169461 (+)
AMCG00000346 NA coding downstream 103798 12202170 ~ 12208132 (+)
AMCG00000347 NA coding downstream 156056 12254428 ~ 12285830 (+)
AMCG00000344 LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514 coding downstream 246495 12344867 ~ 12345699 (+)
AMCG00000345 NA coding downstream 258469 12356841 ~ 12364023 (+)
G149739 NA non-coding upstream 64944 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 291647 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 292509 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 294380 11797375 ~ 11798007 (+)
G149668 NA non-coding upstream 297531 11793367 ~ 11794856 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 735167 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1314493 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1551031 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 1641404 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 2366520 14464892 ~ 14465302 (+)
AMCG00000352 NA other upstream 97361 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 1557250 10534590 ~ 10535137 (+)
G149424 NA other upstream 2121586 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2501299 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2545976 9514822 ~ 9546411 (+)
G149859 NA other downstream 581298 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 868505 12966877 ~ 13030853 (+)
G150069 NA other downstream 1592467 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 2034766 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2833406 14931778 ~ 14944400 (+)

Expression


Co-expression Network