G150066 (LOC100846954,LOC107575789)


Basic Information

Item Value
gene id G150066
gene name LOC100846954,LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13649403 ~ 13650051 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU188855
aggcccgtctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacaactgcaccgcatcaaagggacgatggatgGGGCcttgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcatggatgggtattccagcatgagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgtaaatcaatttataacttttttggaaatgcgtttttctggatttttttgttgttattctgtctctcactgctaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttcccccactgtacatt

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188855 True 573 lncRNA 0.44 2 13649403 13650051

Neighbor

gene id symbol gene type direction distance location
AMCG00000387 NA coding upstream 22647 13618488 ~ 13626756 (+)
AMCG00000386 NA coding upstream 31778 13608753 ~ 13617625 (+)
AMCG00000385 NA coding upstream 239544 13352332 ~ 13409859 (+)
AMCG00000384 mamdc1,mdga2 coding upstream 311381 13327392 ~ 13338022 (+)
AMCG00000367 NA coding upstream 700908 12943056 ~ 12948495 (+)
AMCG00000388 NA coding downstream 17838 13667889 ~ 13679929 (+)
AMCG00000395 fkbp3 coding downstream 37916 13687967 ~ 13690398 (+)
AMCG00000394 klhl28,LOC106581578,LOC106610877 coding downstream 81462 13731513 ~ 13739622 (+)
AMCG00000396 NA coding downstream 104757 13754808 ~ 13759231 (+)
AMCG00000401 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 109256 13759307 ~ 13759834 (+)
G150042 NA non-coding upstream 236339 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 807730 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 1551031 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 1621960 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 1848663 11800000 ~ 11800740 (+)
G150106 NA non-coding downstream 89725 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 814841 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 1083181 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 1474659 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 1487655 15137706 ~ 15137923 (+)
AMCG00000381 NA other upstream 618550 12966877 ~ 13030853 (+)
G149859 NA other upstream 921500 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 1654377 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 3114266 10534590 ~ 10535137 (+)
G149424 NA other upstream 3678602 9969324 ~ 9970801 (+)
G150069 NA other downstream 40788 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 483087 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 1281727 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 3161402 16811453 ~ 16814365 (+)
G150750 NA other downstream 3285942 16935993 ~ 16938282 (+)

Expression


Co-expression Network