G150506


Basic Information

Item Value
gene id G150506
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15295607 ~ 15299878 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189412
AaggctttaatttttttttattaaatgtacataaagtacacatgataaaaacaaacaagaatagaTTTGTAGTGTACAGGCAAAGTTCTCAAGTAAGACAGAAACTTTGACTTACCTACTACAAAATCAAAGCTCAACATAATTGTCAGAATATAACATCCCACAACCTCACAGTAATCCCTAATGGCCAGAGCAATTGCaggcacaataaatacattttaacatgccATGGACACAAATGTTCACAATAACCCTTATTCTTAGTTTGCATTTTATCTTTGGAAATAAAGAATTATTAAACCAGAAAGACAGATATGTAATTTTCTTCCATTCTTTGGATATTTCTATGTCCACTAATGTGGAAATAAACACCATACTATATTCAATTGAATAAACATACTTTGGTTCAAAAGGTACAAAGGCACTTATGAATATTCAAACAGTTGTGGATCATCAGCAACCTAATAGatagtctgtttttcttttaatgcatcCACAGagaatattttacttaaatctGTATTGATGTGGAACCTTCAGCTACCACTTTATCCATAATTTGATCCATTAAATCCATAGAATATAAAACAACTGTTAGCATCATTATCAgaggtattaaaaaaacaggagtTGAAAATTGGTCAGCTGACTGCattttaataagtaataatatCTATGTAAAATGTCCCCTTAGAGAAACATTGACAGCTGCTTGGGGTTGaaacatgaatatattaaaaatggagACAAAATGAAGCTGAcatttgtgtgattttgaataTGAAAGTAGATTAAGGTTTGCTGTCCGGTTGATGCAGCAGATAATGTCTGAATGCAAATAACTGAGCACAAGGATAAATGAGAAGAATTTCCCATagtgaatggaaaaaaacaaatatgtgccCCCTGGGCCAAGAACATAtggcaaattatatatatgaaatgacCAGTCAGTGACCATcaatgaataatgaaataaaacaaataccaaaaacaaaataccaagccaaaaattcaacaaataaaacagtatcttTCTTCAACAGACATGCTATGTTCAATTGTTAAACACCATAATATGAGTGCATACTGATATATATTGACCTAATCTCAGCAAAGTGTGAATGTCAATATGTTCATTTGATATGATCTCTGTGTCATCAGCAACTCTTGCCCTGGAGTCAGACTGAAGCTGgcatatataaaacaatcttTATGGTATAGAACaccatacaatacatacaataCCCCCCCCCCAGCAAGACcacatagaaataaaaacattattccaTTTTCACTAGGacagtaaaaaagaaaagaaaaaacaacacccaAAACAGATTTTATCAGTAGTATGACTGTCACCTACCCTGGCATTTAGATTATGACAGTTCAAAAAACAATTCACAATCATTCAcacaattctaaaaaataaaaggcctGAATACAGAGTGTTCACTAACTAAAAAAAGCACACTAACTAATATTAGAATGTTATAATTATCATAACGGTGTcttaaaggaaatgaaaaaactTCTGAAGTAGTCTCAAAAATATAAAGATGACAGTATTAGAATATTAGTAAGGCTTATGCATATACTGCCTAGGCAAAAATGGTCTATATTTTATCTTAATtatgaaagtaaatgtttttaagttttatattaagtttttcatgtttgtgaTACATTGCTTAATAAGGAGCTGTTATCATAAAACCTTTGGTGcatattgttttttgaaaaaaataataaaatctaatttgagCATTGTACCCAAAATCCTCACACAGCCAGCAGTTATAAAACTTTCACAAGCTTATACAGATCATCTGAAGCGAATCCTAGAAATCAtaagattttcttttcctttaaaaggtgaatcttaaacaaaacaaaaaagtggtaACTTATTAGGAGTCTCTTTTGGTACAAAGTGGTAATaagaaatgcactttttaaCTGACCAGAGACCTGATGCACCACCACACCACCATGAGGTAAAGCATGCCTTGCTGCTATTCAAGCCCTTTGCAGCTTTATAAACTCAACGTACAGCCTGGAAACAAACTGTTTAAACAGTAGTACGATATCACATGATCTCCACTAACAGGAGGTGCCACAAACAGTTTACATCGTGCCAAAGAAAAGGGGCACAGTGCTGGCTGATAAGGTCAAAGGGTTCACTCTGGACAGCCAGATAACCATGTCAGGTTCTGTGAAATCTTGTTTAATGAATTCTGCCAGCATCCTGGTATGTCCATCTTACGAATGTCTGCCCTGACGCATTCCGTCAGCTCGTTTACTAATAACCAGGTTTCATTGACTGTTGTAACCGTGATCAGTACAGAGAGCAATTCTACGTAACGCTGTTGTTACACCACATTACAACTGGTTTCCTGGATGATAGTAAACACACCGTTTTATTTCTTATAGTACTTATAGTATAGTACACAAATCCTTTTATTTCTTATAGTACTTTTTCCATAGCTATGCAGATAAGAATGTGTTTTGAGAACTTCTATTTagtgaaaataaagaatgaagtCATAACTTTCTGATGGATAGTGTGACGCGCGTCAATTTTCAGCCCACAGGAGTTGCTCTGAAGAAAGACTCATGCATGGATCATAGATTATCACCTTAAACTGAAGAAAAGCAACCTTTAACCCTCGCCACCCCTCGTTTCATGAACTCTCCGCCACAATTCCACACCTTCCAATCACCGTATCACCTCACTACCTCCTGGCATGCACTAGCACAACGTATAAGTGAGCACAAAAACCTTTTTTGCACAACCTCTTCTGACCTTTTAGCACATCCCTCTTATCAAACGTATCTCAGCCACTCTCTGGCAGCAGAAAAGAATCCTCTCTACCCTGCAGCTGAGCCCAACTCTTGGAAACCTGGCCTGTGTAGTTGTGTTGAACTGGCCAGGATCCAATGGTCTAGGTATTAGCGTCCGCTGGTCCAGTGCAGGTCCAGACTACTGACTGTCCCTCGCTGCTCTGTCCGGTTCCTCACCCTCCTCCTCTGGCGTTCGGTCTGCCGGGTGGTTGTTGTTCGTCTCGGATCTTGCAGTGCTCAGAGTCAGGGTCTCGATGGCCTTCCACAACttctcattttctttcagttgaTCGCTAAACTaaaagggtttaaaaataatacataaaatacataacagcAGCAACTGACACTGTGTAGTTGTACACAGTGTGACAGTGTACACCGTTTCATGACACAGCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189412 True 3248 lncRNA 0.36 2 15295607 15299878

Neighbor

gene id symbol gene type direction distance location
AMCG00000473 NA coding upstream 1138 15292315 ~ 15294469 (+)
AMCG00000462 eif2b2 coding upstream 14145 15278456 ~ 15281462 (+)
AMCG00000460 tmed10,LOC106608292 coding upstream 19112 15271455 ~ 15276495 (+)
AMCG00000468 NA coding upstream 32816 15261091 ~ 15262791 (+)
AMCG00000461 clg15h14orf1,LOC106591002,LOC107724257,LOC104921354,LOC107554785,LOC102222511 coding upstream 108268 15185447 ~ 15187339 (+)
AMCG00000474 eml5 coding downstream 53099 15352977 ~ 15384001 (+)
AMCG00000478 NA coding downstream 126667 15426545 ~ 15442287 (+)
AMCG00000470 NA coding downstream 320768 15620646 ~ 15641297 (+)
AMCG00000471 NA coding downstream 350413 15650291 ~ 15669353 (+)
AMCG00000484 dicer1,LOC107552827,LOC107668604,LOC107671118 coding downstream 378824 15678702 ~ 15694287 (+)
G150484 NA non-coding upstream 44878 15250517 ~ 15250729 (+)
G150475 NA non-coding upstream 66345 15228957 ~ 15229262 (+)
G150460 NA non-coding upstream 134930 15160457 ~ 15160677 (+)
G150459 NA non-coding upstream 135484 15159608 ~ 15160123 (+)
G150458 NA non-coding upstream 140523 15154635 ~ 15155084 (+)
G150563 NA non-coding downstream 315252 15615130 ~ 15619026 (+)
G150642 NA non-coding downstream 890942 16190820 ~ 16191021 (+)
G150686 NA non-coding downstream 1345250 16645128 ~ 16646915 (+)
G150687 NA non-coding downstream 1348027 16647905 ~ 16649574 (+)
G150689 NA non-coding downstream 1382037 16681915 ~ 16722627 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 351207 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 1141767 14133138 ~ 14153840 (+)
G150069 NA other upstream 1603018 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 2264754 12966877 ~ 13030853 (+)
G149859 NA other upstream 2567704 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 1511575 16811453 ~ 16814365 (+)
G150750 NA other downstream 1636115 16935993 ~ 16938282 (+)
G150811 NA other downstream 2245576 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 2448632 17748510 ~ 17759582 (+)
G150976 NA other downstream 2853986 18153864 ~ 18159321 (+)

Expression


Co-expression Network