G150687


Basic Information

Item Value
gene id G150687
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16647905 ~ 16649574 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189633
GATTCAATGTAGGCTGATCTGGGCCCCAGGACAGCAGGTGTCTGCAACTCGGAATGACATCATAGACAACACAAGCCATAACCTATAGAATCagttcatgtatttaaataaagtgacaTCACACACAGTATGCATAACATCCCTACTCAtattccctccccctcccccctcgaACATTAGGACATATCAAAAGTTACAGATGTTCATCCCAACCCTgcataattattaaatacaaacattaagaaaaataatggaaTGTCAAATAAGGAGTGAACAGCAGCAAAGCACTTTTATTCAAAGGACTGGCAAGACCTGCATACCAAAGTTGTCTTGTTCTGACTAGGAGGTGAGAGCTCCTAATGCCTGGACCTCCCCAAGCAAAACAGGGCATTGTTATAAAGTCTGGTACATAGAAGCAAACAGCAGTAACAATTTGATTCTGCTTGATGTGGGTCTATAGTGCTCAGGGGCTGACAGAAAGCACAGCCAACAGGAAGCAGCGCTGAAATGTTATCAAAGCATCGCtttaaagtgaaatgtttttaaaacacagaaatgatGGTCCCCTGCAAAATGCATGCAGAGAAACTgaagatttttaaaatgcagctatTTCTCAGATAGTTACCCAGATGCACGTCTATATGAGTGTGGTCAGTTTGTGGATGACTAAGTGCTGGGAATGGTACCCTATGGTGAGAGGCAAATAAAGCTTTGATGGGATCCAATTTGAATAATGCTACACACAtagtattacattaataaattaggACTGCATAAGCTtggatttttaaatagattaaatatgTCTTGGATATATTTGAGTTACCTCTCATAGTCTGTTTCTTTCAATGTCATAACCATTTTGCTAGTAGTCTTACAGATCTTTCTTGAAAAAGCAACGAACAGACAAAAAGTGGATCTTCGCTGTGTCTGCGTCAATAGTGCATAGCAAATTCCTAAGTGCTGGTTTCCCTGTCTTTACTGAAGACCATGTACACAGAAGCCCACTGGCCATGACACTTGCATGGCATCATGGGTAAGATAATTTTACAGGTGAATCAGACAAAACAAGGGCGTGATCATCTGAGCTTGACAGCTTGTATTTGTGCTCTACACTTTTCATGCGAAGTAGCTTAGGGGCAGGTGCCAATAAAATTAGGTTTCACACTTTTATACCAAAAACGGTTAAAGGGTTGGCCCAAAACACAGAAGTTGCTGCCAGTACctgtcagaacacacacacacaaatcaaatcaaaacaaaaacagggtaatcataaaaaatatttacaaccAAAATACtagtaaacaaaacatttacttttgcattttttcataGCTAAAAGGCTGTCAAACAACCTTTTTAACCCATCTGTACAATATGATTCATTTCaagaatacaaattattattattttttgcactaTTTTATCctgccaaattaaaaaaatatattgtggcaGCCTGTGTGTTctatgtttgatttttttttcttttcactaactaccc
>TU189636
ACAAGATCTACAAGATATTTAAGAGAACAAGGTCTCATtaaagctaattaaaaaaagtggATGTGGGAATGTGTAGTGGGAAATGTAAAGATGCTTTATAttgaataaagaaagaaaaacgaCAAATTAGGTGGAGTCCTTAGGTAATGTTTACTATAGTGATTCAATGTAGGCTGATCTGGGCCCCAGGACAGCAGGTGTCTGCAACTCGGAATGACATCATAGACAACACAAGCCATAACCTATAGAATCagttcatgtatttaaataaagtgacaTCACACACAGTATGCATAACATCCCTACTCAtattccctccccctcccccctcgaACATTAGGACATATCAAAAGTTACAGATGTTCATCCCAACCCTgcataattattaaatacaaacattaagaaaaataatggaaTGTCAAATAAGGAGTGAACAGCAGCAAAGCACTTTTATTCAAAGGACTGGCAAGACCTGCATACCAAAGTTGTCTTGTTCTGACTAGGAGGTGAGAGCTCCTAATGCCTGGACCTCCCCAAGCAAAACAGGGCATTGTTATAAAGTCTGGTACATAGAAGCAAACAGCAGTAACAATTTGATTCTGCTTGATGTGGGTCTATAGTGCTCAGGGGCTGACAGAAAGCACAGCCAACAGGAAGCAGCGCTGAAATGTTATCAAAGCATCGCtttaaagtgaaatgtttttaaaacacagaaatgatGGTCCCCTGCAAAATGCATGCAGAGAAACTgaagatttttaaaatgcagctatTTCTCAGATAGTTACCCAGATGCACGTCTATATGAGTGTGGTCAGTTTGTGGATGACTAAGTGCTGGGAATGGTACCCTATGGTGAGAGGCAAATAAAGCTTTGATGGGATCCAATTTGAATAATGCTACACACAtagtattacattaataaattaggACTGCATAAGCTtggatttttaaatagattaaatatgTCTTGGATATATTTGAGTTACCTCTCATAGTCTGTTTCTTTCAATGTCATAACCATTTTGCTAGTAGTCTTACAGATCTTTCTTGAAAAAGCAACGAACAGACAAAAAGTGGATCTTCGCTGTGTCTGCGTCAATAGTGCATAGCAAATTCCTAAGTGCTGGTTTCCCTGTCTTTACTGAAGACCATGTACACAGAAGCCCACTGGCCATGACACTTGCATGGCATCATGGGTAAGATAATTTTACAGGTGAATCAGACAAAACAAGGGCGTGATCATCTGAGCTTGACAGCTTGTATTTGTGCTCTACACTTTTCATGCGAAGTAGCTTAGGGGCAGGTGCCAATAAAATTAGGTTTCACACTTTTATACCAAAAACGGTTAAAGGGTTGGCCCAAAACACAGAAGTTGCTGCCAGTACctgtcagaacacacacacacaaatcaaatcaaaacaaaaacagggtaatcataaaaaatatttacaaccAAAATACtagtaaacaaaacatttacttttgcattttttcataGCTAAAAGGCTGTCAAACAACCTTTTTAACCCATCTGTACAATATGATTCATTTCaagaatacaaattattattattttttgcactaTTTTATCctgccaaattaaaaaaatatattgtggcaGCCTGTGTGTTctatgtttgatttttttttcttttcactaactaccc

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189633 False 1510 lncRNA 0.38 1 16648065 16649574
TU189636 True 1670 lncRNA 0.37 1 16647905 16649574

Neighbor

gene id symbol gene type direction distance location
AMCG00000486 vrk1 coding upstream 356408 16280906 ~ 16291497 (+)
AMCG00000490 papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 415474 16216282 ~ 16232431 (+)
AMCG00000492 NA coding upstream 432434 16208705 ~ 16215471 (+)
AMCG00000491 galc,LOC107372531 coding upstream 439629 16198281 ~ 16208276 (+)
AMCG00000483 NA coding upstream 618744 16023883 ~ 16029161 (+)
AMCG00000495 ccnk,LOC107560198,LOC107678663 coding downstream 91110 16740684 ~ 16745744 (+)
AMCG00000512 NA coding downstream 146519 16796093 ~ 16801794 (+)
AMCG00000513 NA coding downstream 165269 16814843 ~ 16849247 (+)
AMCG00000502 NA coding downstream 294486 16944060 ~ 16944477 (+)
AMCG00000498 adck1 coding downstream 356895 17006469 ~ 17051834 (+)
G150686 NA non-coding upstream 990 16645128 ~ 16646915 (+)
G150642 NA non-coding upstream 456884 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 1028879 15615130 ~ 15619026 (+)
G150506 NA non-coding upstream 1348027 15295607 ~ 15299878 (+)
G150484 NA non-coding upstream 1397176 15250517 ~ 15250729 (+)
G150689 NA non-coding downstream 32341 16681915 ~ 16722627 (+)
G150767 NA non-coding downstream 546903 17196477 ~ 17501853 (+)
G150831 NA non-coding downstream 1006002 17655576 ~ 17702341 (+)
G150877 NA non-coding downstream 1219724 17869298 ~ 17870290 (+)
G150886 NA non-coding downstream 1300360 17949934 ~ 17971252 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 1703505 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 2494065 14133138 ~ 14153840 (+)
G150069 NA other upstream 2955316 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 3617052 12966877 ~ 13030853 (+)
G149859 NA other upstream 3920002 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 161879 16811453 ~ 16814365 (+)
G150750 NA other downstream 286419 16935993 ~ 16938282 (+)
G150811 NA other downstream 895880 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 1098936 17748510 ~ 17759582 (+)
G150976 NA other downstream 1504290 18153864 ~ 18159321 (+)

Expression


Co-expression Network