G150689


Basic Information

Item Value
gene id G150689
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16681915 ~ 16722627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189639
tttttgttttTCAGGTGAAAACATTAGTTCTGTTTAATCTCCCAATTTAACCAAGGAGCAGAAATAACAGTTAAGACAGCTTTTCACAAGGCTGTTCGTCTCTAAATAAACTCAGGTTTTACTTCTAAAACCACCCTAAGTAAAGGCATTACAATCCGTATGAACTCCGATGGTGGTTTGGTGTCAGTGATTAAGGATTTGAAGAACGATGGTGCGTTGTATACTGATGCAGCTCTTGGATCTCAGTaactacacatttatatacagagCAGCAATTACATCAAGATTGTTGCAAGGTAGAGCATCTGTACCATCATTAAAATAGACTATAGCATAATAGAAAGCTGCTTATCTTCTTACTCCATGGGAAAgaccattacaaaaaatacagtgcagattgaaaaaaagattaattaaaaactcaggaaacagtacagtagagagagagagagagagagagatagaaaaataacacCTGCTTCGACAGGAAACGTGTCAACTGATTCGTCTCTTCGCGAAAAAGATACAAGGGTCCGATTTGTTAAGGCTTTCACAAAACATGGACTCGAACTAACACTGATAAACCATAAATGCATGTGATATGCTCGACATAAACTATGACCTATCATAAAGAAATTCAATATATAAACGCAATGAAACCAAAGCAATCACTCTGTGTAAAGTATAAATTAAGTTTCAGAGAAGTGTTGTAAACTAGCAACTGGTTATGTTCAAAGCTAGCGAGCACTCTCCTTAAAATGCAGTGCAACAACAATTAGGTAACAGTAACATTGTGATCGCTTCTCAAAACCTTTAGTAACAAGTTTAAATGTTATGTCACATATTTAAGCTCGTAGGAACTCATTCTTACGTTCACGAAAatactttgtttgcatttttttgaaGTTCTAAAAACttcaatccaatccaatccactTGTAGTCCtgcaaaatacatcaattatgCACTAAACATTACAAACATGTCCAATTACTCAATGCATATACATGAACATTAAAGTGAATTCACATCTCAGCAACTAATAAGTAACTGAAGGATTAGTCTCCACTTAAAAAGCACAGTCTAAAGATTGTCCACTGAAAATGACGTGAGTATGGGGAACTTAATTAGGTAAACAAATTACTGCAAAAGATGCTGTTCCAGGGAAATGTCTTTGTACTGTTATCGTCTGCTGGAAAACTCGAGGGCAGAAACTACTATATAGCGTCACTATTGCTAGTCAAATGAAGTAAACAACCACCTTACTGCAAAAACGCTCCAAAAACTGTATTCCCCACATAGATAAATGGTACATTCAAAGTTTCAAACCTAGTCCTTCTAAAAAGTAACGGCTACTAGGAAGCCTTTCTTGTACTGCGTTTGTTGCCACTGGAAATATAAAGCCTTAAAATAGGCCAAAGGAAAGGATTCAATAAGCACATTCTATATCAGAGCAGCAGttcaaatcataaaaacaaaaaagagcaaccaaaagataaaaaaaaagacaaactttAATGCTTCTCTCACGGTTTTTGTTAAAGATTTACAAGCAGCACTAACTCTTGCACTTTTCTCTGATGCAAACACATATCTAAGCCACACTGGACAAAtaaactctttgtgtaaagttttgccattttaattatgtttattttaaagtctccaatggaaaaaaagatcagaagaataataattaaggtTGCTGTTCTTCCTCAGCAGTTTCTTTACCATTTTCTTTGGCATCTCCAGTCTTTTTGGCACTTTTGTCTCCACAGGGAGTTTCTCTTTCCGTCTTGGTGCCATTGATCTGCTTACTATCCCCGTTCACCAAAACATCACCGGCCACGTTGACCTCGGTGAGGGCCTCGTTCATCTTCAGCTCCTGCTCCCCGGCTTCGTCCGCCTCTTCCAGCTTCCTGAGAATGATGGGCAACTTGGAGTCCGACACAGAGTTCTCCAGCAAAGAGATGTTGCTCTCCTCGTACTTTGGAAGAGGGGCTCCGTCTTCCAgctgcttctgaaaatgctccCTCTTGGCCCGACCGCTGGCCACCGCCTTTTCCAGGATCTCCTTCTCAGCCAGACGTAGCTTAATCGCTACCCTGGAGTGAAACGACAGGTCGGGCTTTTCCAACAACGATCGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189639 True 2150 lncRNA 0.39 2 16681915 16722627

Neighbor

gene id symbol gene type direction distance location
AMCG00000486 vrk1 coding upstream 390418 16280906 ~ 16291497 (+)
AMCG00000490 papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 449484 16216282 ~ 16232431 (+)
AMCG00000492 NA coding upstream 466444 16208705 ~ 16215471 (+)
AMCG00000491 galc,LOC107372531 coding upstream 473639 16198281 ~ 16208276 (+)
AMCG00000483 NA coding upstream 652754 16023883 ~ 16029161 (+)
AMCG00000495 ccnk,LOC107560198,LOC107678663 coding downstream 18057 16740684 ~ 16745744 (+)
AMCG00000512 NA coding downstream 73466 16796093 ~ 16801794 (+)
AMCG00000513 NA coding downstream 92216 16814843 ~ 16849247 (+)
AMCG00000502 NA coding downstream 221433 16944060 ~ 16944477 (+)
AMCG00000498 adck1 coding downstream 283842 17006469 ~ 17051834 (+)
G150687 NA non-coding upstream 32341 16647905 ~ 16649574 (+)
G150686 NA non-coding upstream 35000 16645128 ~ 16646915 (+)
G150642 NA non-coding upstream 490894 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 1062889 15615130 ~ 15619026 (+)
G150506 NA non-coding upstream 1382037 15295607 ~ 15299878 (+)
G150767 NA non-coding downstream 473850 17196477 ~ 17501853 (+)
G150831 NA non-coding downstream 932949 17655576 ~ 17702341 (+)
G150877 NA non-coding downstream 1146671 17869298 ~ 17870290 (+)
G150886 NA non-coding downstream 1227307 17949934 ~ 17971252 (+)
G150909 NA non-coding downstream 1251698 17974325 ~ 17974800 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 1737515 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 2528075 14133138 ~ 14153840 (+)
G150069 NA other upstream 2989326 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 3651062 12966877 ~ 13030853 (+)
G149859 NA other upstream 3954012 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 88826 16811453 ~ 16814365 (+)
G150750 NA other downstream 213366 16935993 ~ 16938282 (+)
G150811 NA other downstream 822827 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 1025883 17748510 ~ 17759582 (+)
G150976 NA other downstream 1431237 18153864 ~ 18159321 (+)

Expression


Co-expression Network