G150750


Basic Information

Item Value
gene id G150750
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16935993 ~ 16938282 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189714
TCAAAGATTGCACGGTTTTATTTTGGAGATTGGAAAAATGGCGGCTCCCActaaaaaagcatttgaagtGTTTGTGTCTAAAATACCATGGACCATGGCAACCAaggAAGTGAGGGAATACTTCACACAGTTTGGACAAGTCAGAAAATGCCTCCTTCCTTTTgacAAAGAGACCGGCTTCCACAAGGGTTACTGCTGGGTTGGATTTACCAGTGAGGACGGCCTGCAGAATGCACTGCAGAAGGACCCACACCTGGTGGAGGGATCAAAGCTCCAAGTGCAAAGAAACAGAAGAGCATTTGCAGGGCGAAGACCAAATCAAGACTTTGAAGAaagttgaagaaaaataaattgtatggtTTTGTAGTGCTACAATAAATACCAATGTGCAACCATTTTCGCAATaggaaatacaaatttaaatgataTTTATTCCATGTTATTACTGTACAGAGTTCATCATAGgttgaggagaaaaaaacatttcctttcacCTGGTATATACAGGATTACAGCAATTCTACACAAgtgaaaatgtcattaaaacTTCTCTGAAACAAGTTTTGCTTACTGGTCCCTTCCTGATGTCTATTTATTACATGAACataaaaggtaaaaaataaaaatcttaacTACCACTGAAGCACAAGCCTCGCTGGACCCCCCTGGACTTCAACCTAAGACTCATGGTGCTAAATACGcctcagttaaaaaaaaagaggagaaaccacttaaaaacaatcaaaacaaaatatcaacagCTGGTGAGGCCTGTTTATGAAGCTCTGGCTTTATTGTAAGGAACAGgaccataaaaacaaaacatacattgcTCTAGCTGACCCACATCGACAAAACCAGGCCCTCATTCCTTCCTGCGCTTCTTATCGTGGTCATAATCCTTCGAGCGGCCGCTGGCGGAGGGGCGCTTTGAGCCGCCGTGCTGCTTGGCCTCCTCCAAGAACTTATCCAGACCGAAAGGATCCTCCTCGAACTGGACCGGGCCGTCCCTGCGGGGCCCGTGGTCTGTGCCAGTGAATTCCTTGTCGGGGACGAATGGTTATTCTGCATCAGCGTGTCTAAGTCGTCACCGTATAGATCTCGATCGGCGTTCTTACTGGGCCTGTAAATGTTCTGTGCCATATCTCTGCCGTTTCTGAAGGGCTGGTCGTACACATTATAGACCTCATCTTCACCACCAGCAAAGCCACTGTCCATCCCCTGCAATAGACGGGAAACAGTCAGCAGTCataaacacactgca

Function

GO:

id name namespace
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU189714 True 1264 TUCP 0.44 5 16935993 16938282

Neighbor

gene id symbol gene type direction distance location
AMCG00000513 NA coding upstream 86746 16814843 ~ 16849247 (+)
AMCG00000512 NA coding upstream 134199 16796093 ~ 16801794 (+)
AMCG00000495 ccnk,LOC107560198,LOC107678663 coding upstream 190249 16740684 ~ 16745744 (+)
AMCG00000486 vrk1 coding upstream 644496 16280906 ~ 16291497 (+)
AMCG00000490 papola,LOC107560206,LOC107747941,LOC107678672 coding upstream 703562 16216282 ~ 16232431 (+)
AMCG00000502 NA coding downstream 5778 16944060 ~ 16944477 (+)
AMCG00000498 adck1 coding downstream 68187 17006469 ~ 17051834 (+)
AMCG00000503 NA coding downstream 165798 17104080 ~ 17106602 (+)
AMCG00000504 nrxn3,LOC101487700,LOC107751785,LOC102792091,LOC107676277 coding downstream 231968 17170250 ~ 17183080 (+)
AMCG00000508 NA coding downstream 253499 17191781 ~ 17194116 (+)
G150689 NA non-coding upstream 213366 16681915 ~ 16722627 (+)
G150687 NA non-coding upstream 286419 16647905 ~ 16649574 (+)
G150686 NA non-coding upstream 289078 16645128 ~ 16646915 (+)
G150642 NA non-coding upstream 744972 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 1316967 15615130 ~ 15619026 (+)
G150767 NA non-coding downstream 258195 17196477 ~ 17501853 (+)
G150831 NA non-coding downstream 717294 17655576 ~ 17702341 (+)
G150877 NA non-coding downstream 931016 17869298 ~ 17870290 (+)
G150886 NA non-coding downstream 1011652 17949934 ~ 17971252 (+)
G150909 NA non-coding downstream 1036043 17974325 ~ 17974800 (+)
AMCG00000514 NA other upstream 121628 16811453 ~ 16814365 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 1991593 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 2782153 14133138 ~ 14153840 (+)
G150069 NA other upstream 3243404 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 3905140 12966877 ~ 13030853 (+)
G150811 NA other downstream 607172 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 810228 17748510 ~ 17759582 (+)
G150976 NA other downstream 1215582 18153864 ~ 18159321 (+)
AMCG00000550 NA other downstream 1473161 18411443 ~ 18419576 (+)
AMCG00000573 NA other downstream 1551569 18489851 ~ 18530757 (+)

Expression


Co-expression Network