G150886


Basic Information

Item Value
gene id G150886
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17949934 ~ 17971252 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189912
aaaaaataatttacagtcaTAGGTGTTCCAGTAAAACATTCCCTCTGCcatgaatataaaaatgcaattaaaagatccagaaaaaaaaaatttgaatatactcaagaaaaaaaaaagaaaaaaacccaAGCAACATTTTCCAAAACCTTATCTTTAATGGAACAGGGTAAATATACAGCAAACATGGTCATTCAGCTCTTGACCGGCAATCTAGACTCTTACGCAGTGTTCACAGGGGGTCGCTCTCTCTCCGGCCCGGGGCTGCAGCACCCAGGAGGACTCAATCTCGCTCCGCTAGAGACACCAGGTGTGTGTCGATCTCAGCTTCCGAGAGAATCCTGATTTAGGCTCTTCTGTTGTAATCACGCCGATCTCGAGCTCCGAGGGCTTGAAGTCGATGGACAGCACTGTGGACAGGCAGGTAATTGCTGTCTACGGTTTGCTCAAAGGTCCAGTCAAGTTTCTTCTTCACCTTCTTCTCAAGGAAGCTGGTGGCCTCTGTCTGTTTGACCCCGGCAGCCGTGGCTTTGAAGCCGCAGTAGTAGCCAGCCGGGTCACACTTGTATACCTGAGGGCCAAACTCCTCGTCCATCCCGATCATGATCATGCCTGCGGTGCAGAGAGACGCAGGACAATGAAGACCTGCTTCTGATGGGCTGAAACCACGATGGTCTCTCAACAAGtTTGCTGCTTCGTAGCGGGCTCTCTGGACTTGGGACCTGCTATCAGCTTGATGAAGAAAAATCAGACCACTGAGCGCAGGGCAAGTGGAAACGATACGAGCAAAGATGGCATCTAGTGCTCAACAGACCTCTTCTGTAACCCAAGAAAGTTCAAAAATGGTAATTCTCCCATTATGAAAatcacttgttttatttgtattattgtattacacCCACACTTTGTCTGAGGTAccagttttttccccctcaatcACAGGTCTTAACAACACTTTCAGGTTAAACTTTCAGAAACTTTTACACACTGGTCAAGTGTGCAATAAATTCAATGCATGTTACAAAAGTACCACTATTTAGCCATTGTGCATTGGAATTAGAGCATACCCTAGATCAGCTTCAGAAGGTGGAGAAATAGAGCTCAAGATATCAAAGCTTCGGTTACCTGTCATCCCAGACATCACACAACCGATGTTTTCAGTTATTCTGAACAAGTGGGTGACAGTGTTGGAGTCCAGAAGCTTGTcctggaaaaaatacaatatttaaa
>TU189913
ttgttttttttttttTTTTCCAAAACCTTATCTTTAATGGAACAGGGTAAATATACAGCAAACATGGTCATTCAGCTCTTGACCGGCAATCTAGACTCTTACGCAGTGTTCACAGGGGGTCGCTCTCTCTCCGGCCCGGGGCTGCAGCACCCAGGAGGACTCAATCTCGCTCCGCTAGAGACACCAGGTGTGTGTCGATCTCAGCTTCCGAGAGAATCCTGATTTAGGCTCTTCTGTTGTAATCACGCCGATCTCGAGCTCCGAGGGCTTGAAGTCGATGGACAGCACTGTGGACAGGCAGGTAATTGCTGTCTGcagggaaagaaaaggaaagaaaaaagggcaatattaattttaaaagaaaatgccagGATTCCCAGAAGACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189912 True 1227 lncRNA 0.44 4 17967752 17971252
TU189913 False 388 lncRNA 0.47 3 17949934 17968712

Neighbor

gene id symbol gene type direction distance location
AMCG00000542 ralgapa1,LOC107589631,LOC107693153,LOC107725466,LOC107586611 coding upstream 11506 17883829 ~ 17938428 (+)
AMCG00000520 LOC107670363,LOC107724957,LOC105896953 coding upstream 149180 17795348 ~ 17800754 (+)
AMCG00000527 psmc1b,psmc1 coding upstream 181846 17760703 ~ 17768088 (+)
AMCG00000526 NA coding upstream 201912 17719649 ~ 17748022 (+)
AMCG00000530 NA coding upstream 410525 17529717 ~ 17539409 (+)
AMCG00000537 ppp2r3c,LOC106611177 coding downstream 27555 17998807 ~ 18004848 (+)
AMCG00000536 NA coding downstream 39748 18011000 ~ 18019882 (+)
AMCG00000546 eif5,LOC108435020 coding downstream 122737 18093989 ~ 18100872 (+)
AMCG00000549 LOC106607643,LOC105020469 coding downstream 135639 18106891 ~ 18118266 (+)
AMCG00000547 NA coding downstream 154556 18125808 ~ 18153361 (+)
G150877 NA non-coding upstream 79644 17869298 ~ 17870290 (+)
G150831 NA non-coding upstream 247593 17655576 ~ 17702341 (+)
G150767 NA non-coding upstream 448081 17196477 ~ 17501853 (+)
G150689 NA non-coding upstream 1227307 16681915 ~ 16722627 (+)
G150687 NA non-coding upstream 1300360 16647905 ~ 16649574 (+)
G150909 NA non-coding downstream 3073 17974325 ~ 17974800 (+)
G150913 NA non-coding downstream 23307 17994559 ~ 18063346 (+)
G150951 NA non-coding downstream 106862 18078114 ~ 18081341 (+)
G150953 NA non-coding downstream 113208 18084460 ~ 18084687 (+)
G151050 NA non-coding downstream 387995 18359247 ~ 18360292 (+)
AMCG00000525 NA other upstream 190352 17748510 ~ 17759582 (+)
G150811 NA other upstream 401426 17545454 ~ 17548508 (+)
G150750 NA other upstream 1011652 16935993 ~ 16938282 (+)
AMCG00000514 NA other upstream 1135569 16811453 ~ 16814365 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 3005534 14931778 ~ 14944400 (+)
G150976 NA other downstream 182612 18153864 ~ 18159321 (+)
AMCG00000550 NA other downstream 440191 18411443 ~ 18419576 (+)
AMCG00000573 NA other downstream 518599 18489851 ~ 18530757 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other downstream 563217 18534469 ~ 18565627 (+)
G151522 gpr135,LOC107564991 other downstream 1998087 19969339 ~ 19972015 (+)

Expression


Co-expression Network