G150951


Basic Information

Item Value
gene id G150951
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18078114 ~ 18081341 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189986
GGAAAAAGTTTGAGAAGTTTACACCCCCCAGCCCTTGATGCATCATGTTGCCTTCTTGAGCATCAGTGAATGTTTTCACCCTTTGTAATAGTTGTCTATGAGTCCATCTGTTGTCCCCACTGTGAAAAGGTGGATCTGAAAATCATACAGTCACTGTTGGAAAGGGGGTCAAATATGCAGAAGATGCTGGAAAACCAAAGAATGTGCAGGACCTGGAGGATTTTTCTGAAGGACAGTGGGCAGTTTAATTGCTCAGGATAAACAAGGACTCATGAACAACTatcacaaaactaaaaaacagttGTGGATCATCTGGGTAACAACAACAAGGTAGTCACTTACAAAGTTCACTGTTTCCACAgcactgtgaatgtttaatgggatgtgttcaataaagacatgaaagattataattgtttgtgtgttgttagctgaagcacattgtgtttgtctaTACTTGTGACTGATGATCAGATGATATTttatccactggtcatggtccacattggaaccaatgacataggaaaaggaagggcagaggttctgcaagatacatttaaagagttaggaaagaaactaaagagtaGAACCTCCACGGTACTTTTCTAATAAATACTACTGGTAcgacgtgccaggccagggagacaagcagagattagaaagttgaaatcctggtgtagggaagaggacGTTAGATTGATGGGGCATTGGTCTGTcgtctgggatagatgggacccgTACAAACCTGTGCAGAGAAATAGAGAATCTAACTAGAGACCAGGGAggcagggagttctgacaatgggagatgttccactaaggaaagaaaacaaagagaaactgctagtaggaaagtcctgaaatgtctgtacctcaatgccaggagtataaggaacaagatgttgggcttagaagccacagtgctggcatgtgactatgatgtagtaggagtgacagaaacatggcttacagaaaatgaagttgaaaggatacacacagtttagaaGAGATgggcaaaattgaagaggtggtggggtagcattatatgtcagaaatgacatgggcagaagaactcaaattagatcctgctaaTGAAACAGAATTTTTGTGGGTTacacttttgaataaaagatctggaggattagtggtagaaGTGTCTTACAGACCAccaaccatccatccatccatcttcgaaacccgcttatcctggtgagggtcgcagggaagccggagccgatcccggcaggcatagggcacaaggcaggaatacagccaggacgggacgccagtccatcgctggatACAGACCACCTAaatcagatattcagaaagatgttgcactgtacaatgtaatcagaactgcatgtagcaaggatgtggctctTATAATATGGGATTTCCCAAACATAAACTTGTGGAAAATGTCCtatatgaatatttaacagaggtttttaaaaagaaaaaacacataacatACCACAGGTTAATAATCATTCCTGTCAAACTCTAAGaaagatcaggataaatgaggaggaggtactaaagggactagcagaattaaaaacaaacatcacctgggccagatgggatatttccaacagtactggTGAAATTATAGGCCACTACCTAAACTATTCCAGTTGACACTTAGAACTGGGGATATGCAAATTGATTGGAAAGCTGCTAAtgtcataatacaAAAAAAAGAAATAGCCTACaattaagtatagaattgtataaagaagttattaaagaacaaacttttatttcacaatttagaaaatcaaatctaaacagaacaaaaaccagcagggtagaaTGTCAAAAATGGGAACAAGAAAATAGTGGGGGGGCCCCCAAATCAAATCCTGGCTGCGGTCAGAGACGGTGATTCAGGGCTCATCAGTGATGGGATTGTTCCCAAACATATTGCAACAGCCCCATTGTGTGGCTAATATTGGCAATTACAATAAATTGTGATAACTAATTGTTATCCTAACAAGggattaattgtatataaatcAGAATGGTCCAAATGTCTTTGGTACCATATTATCACAGTGAAGACAGAGGGGACACTTGTATATCTTCATGTCAATTGTATCTGTGTTACCCACATGTTTTCCAAATAAACCATGTTGTTAAGATAACACTAGTATGTTATTTCAATGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189986 True 2174 lncRNA 0.40 2 18078114 18081341

Neighbor

gene id symbol gene type direction distance location
AMCG00000536 NA coding upstream 58232 18011000 ~ 18019882 (+)
AMCG00000537 ppp2r3c,LOC106611177 coding upstream 73266 17998807 ~ 18004848 (+)
AMCG00000543 NA coding upstream 115140 17958804 ~ 17962974 (+)
AMCG00000542 ralgapa1,LOC107589631,LOC107693153,LOC107725466,LOC107586611 coding upstream 139686 17883829 ~ 17938428 (+)
AMCG00000520 LOC107670363,LOC107724957,LOC105896953 coding upstream 277360 17795348 ~ 17800754 (+)
AMCG00000546 eif5,LOC108435020 coding downstream 12648 18093989 ~ 18100872 (+)
AMCG00000549 LOC106607643,LOC105020469 coding downstream 25550 18106891 ~ 18118266 (+)
AMCG00000547 NA coding downstream 44467 18125808 ~ 18153361 (+)
AMCG00000545 LOC104965446 coding downstream 80161 18161502 ~ 18176216 (+)
AMCG00000561 NA coding downstream 120141 18201482 ~ 18204980 (+)
G150913 NA non-coding upstream 14768 17994559 ~ 18063346 (+)
G150909 NA non-coding upstream 103314 17974325 ~ 17974800 (+)
G150886 NA non-coding upstream 106862 17949934 ~ 17971252 (+)
G150877 NA non-coding upstream 207824 17869298 ~ 17870290 (+)
G150831 NA non-coding upstream 375773 17655576 ~ 17702341 (+)
G150953 NA non-coding downstream 3119 18084460 ~ 18084687 (+)
G151050 NA non-coding downstream 277906 18359247 ~ 18360292 (+)
G151052 NA non-coding downstream 303259 18384600 ~ 18385046 (+)
G151217 NA non-coding downstream 777922 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 781683 18863024 ~ 18868044 (+)
AMCG00000525 NA other upstream 318532 17748510 ~ 17759582 (+)
G150811 NA other upstream 529606 17545454 ~ 17548508 (+)
G150750 NA other upstream 1139832 16935993 ~ 16938282 (+)
AMCG00000514 NA other upstream 1263749 16811453 ~ 16814365 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 3133714 14931778 ~ 14944400 (+)
G150976 NA other downstream 72523 18153864 ~ 18159321 (+)
AMCG00000550 NA other downstream 330102 18411443 ~ 18419576 (+)
AMCG00000573 NA other downstream 408510 18489851 ~ 18530757 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other downstream 453128 18534469 ~ 18565627 (+)
G151522 gpr135,LOC107564991 other downstream 1887998 19969339 ~ 19972015 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_06374920_06376111 FAM183A coding CI01000340 null 6374811 ~ 6377845 (-)
striped catfish (Pangasianodon hypophthalmus) G183328 NA non-coding NC_047605.1 CM018551.1 17274218 ~ 17376098 (-)
mexican tetra (Astyanax mexicanus) G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding NC_035914.1 CM008317.1 22895055 ~ 22899397 (+)