Gene
RNA
| Item | Value |
|---|---|
| gene id | G151217 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030141.1 |
| NCBI id | CM030141.1 |
| chromosome length | 22147039 |
| location | 18859263 ~ 18859464 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0072329 | monocarboxylic acid catabolic process | biological_process |
| GO:0017001 | antibiotic catabolic process | biological_process |
| GO:0019541 | propionate metabolic process | biological_process |
| GO:0019543 | propionate catabolic process | biological_process |
| GO:0009062 | fatty acid catabolic process | biological_process |
| GO:0019626 | short-chain fatty acid catabolic process | biological_process |
| GO:0046459 | short-chain fatty acid metabolic process | biological_process |
| id | description |
|---|---|
| ko00760 | Nicotinate and nicotinamide metabolism |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU190355 | True | 202 | lncRNA | 0.65 | 1 | 18859263 | 18859464 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00000587 | rhoj,LOC107707080,LOC108257930,LOC107701469,LOC107743974 | coding | upstream | 34585 | 18808614 ~ 18824678 (+) |
| AMCG00000569 | NA | coding | upstream | 169168 | 18678797 ~ 18690095 (+) |
| AMCG00000568 | NA | coding | upstream | 181149 | 18660117 ~ 18678114 (+) |
| AMCG00000578 | NA | coding | upstream | 200326 | 18654633 ~ 18658937 (+) |
| AMCG00000577 | NA | coding | upstream | 206745 | 18636125 ~ 18652518 (+) |
| AMCG00000594 | NA | coding | downstream | 26984 | 18886448 ~ 18923025 (+) |
| AMCG00000596 | NA | coding | downstream | 69202 | 18928666 ~ 18947466 (+) |
| AMCG00000595 | NA | coding | downstream | 90694 | 18950158 ~ 18991317 (+) |
| AMCG00000593 | btbd6,btbd6b,LOC107718408,LOC106571711,LOC107701487,LOC107560384,LOC107755235 | coding | downstream | 427709 | 19287173 ~ 19289424 (+) |
| AMCG00000605 | srp54,LOC107729255,LOC107693187 | coding | downstream | 523468 | 19382932 ~ 19387617 (+) |
| G151052 | NA | non-coding | upstream | 474217 | 18384600 ~ 18385046 (+) |
| G151050 | NA | non-coding | upstream | 498971 | 18359247 ~ 18360292 (+) |
| G150953 | NA | non-coding | upstream | 774576 | 18084460 ~ 18084687 (+) |
| G150951 | NA | non-coding | upstream | 777922 | 18078114 ~ 18081341 (+) |
| G150913 | NA | non-coding | upstream | 795917 | 17994559 ~ 18063346 (+) |
| G151219 | NA | non-coding | downstream | 3560 | 18863024 ~ 18868044 (+) |
| G151226 | NA | non-coding | downstream | 60457 | 18919921 ~ 18921366 (+) |
| G151310 | NA | non-coding | downstream | 271161 | 19130625 ~ 19130890 (+) |
| G151339 | NA | non-coding | downstream | 445782 | 19305246 ~ 19307462 (+) |
| G151535 | NA | non-coding | downstream | 1189952 | 20049416 ~ 20049648 (+) |
| AMCG00000572 | mnat1,LOC107757134,LOC107675563 | other | upstream | 293636 | 18534469 ~ 18565627 (+) |
| AMCG00000573 | NA | other | upstream | 328506 | 18489851 ~ 18530757 (+) |
| AMCG00000550 | NA | other | upstream | 439687 | 18411443 ~ 18419576 (+) |
| G150976 | NA | other | upstream | 699942 | 18153864 ~ 18159321 (+) |
| AMCG00000525 | NA | other | upstream | 1099681 | 17748510 ~ 17759582 (+) |
| G151522 | gpr135,LOC107564991 | other | downstream | 1109875 | 19969339 ~ 19972015 (+) |
| G151676 | NA | other | downstream | 1982474 | 20841938 ~ 20843463 (+) |
| AMCG00000661 | NA | other | downstream | 2667406 | 21526870 ~ 21533538 (+) |
