G151219


Basic Information

Item Value
gene id G151219
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18863024 ~ 18868044 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU190357
GAAATTGTTTACAACAGTTCAAGAGTTTGTCCCCAATATGTGGAGAAATCTCTCTTGTGCAAATTTTATTATGCAGGCCAACAGTTAATGATTCTGGACAATCGTTCCACTAACATGGGCAACAGAAGGCAGATTAAACCAACgcaatgaacaaaaataaacaatcagagACCAAAatcaacagagagagagagagagagagagagacaggcgcTCTGTTTACAAGTTCtcttaaatattacaaaaacaaaattcagtCATTATAAGTGCAACCAGTACAGAATGAGCAGACCTTGTTAataattaaagacaaaacacaCGTTAAGTTGGAATGCACAACGGACCCATAAGTACTGATACATTATCATTTTTCTAAAACACATTCTACAGTTCATCCCGGGAGGCGGCCGGGGCCGAGCGTTGCGAAGCCAGGGAAGCAGCCCGGGGCCTCCAGCACTCCCGGACATAGACGCCGTCGCTTTTTTGTGTGGCGTTTGTTCTTTTACAGTAAAGGCACTGGGGTGTCAAGAGCAGAGAGGCTGAACGCGCCTCTGAACGACGGGGGTGAGagtccgttttttttttttttttttttggtcaatgTTACACTCCCAGACTCTCGAGTGGTCAAGTCACCGTCCCACTGGACAGTTTCGTTGAGTCTATTTCTTAATTTCAGAAGCAGTTAACACACGGTTGAACCGCACACAGTATGTACaaggagagacacacagagagagacaagagacacacacagacacagagacacagcgcATCACGACACCGAGGACCTGCGGGGTTTTCATCCCGGCGGGGCTGCAGGGTGCCAGACAAACCCACAATGGACTCGTTTtgGTCCTCAGACGTGACACAATACACTTAATTACACCTTAACAACACGGGGGCCCACCGGAGAGGGGgaagacacacacacgtacacatgACATGACAGAGACgtaaagaaaggggaaaaaaaactagaaaaacaacCTCGCACACAAAGCAAGCCTAGTCTCGGTCAGTGTGTTCTCTGAGCGTCAGCCCCTCTCCCCTTCCAGCGCAGCGCAGGACAGTGCAATTCGGTACATCCGGGGAGTAGGGGGGGGCACTCAGAGAACCACCACACAGACCCAGACCCGCCGGCGGGACAGAGTGGTTAGAGTCGACTACAATCGGATTCGAGGACAGCGATCTTCCTTGTGCAAAGGAAAGTTTCCAGAGcgtcaaaaataaaataaaacaatcataaaaataataattataatcttgTTATTTGCTATATTGACGTGTATAATTTATGTACCGCATCCACAGCAGCTTTGAGCGGTGGTTCTGGAAGAGAGATAGAGTCACATAAACCAGTAAACCATCACGGCCAGGGGTCTTGCTGCCAAAGTCTCCTGCCAGGCCTGTGAGAGTGTCCAGTAGCACAGGAAGttgtcccccctcccccccaggcAAAGGCCATGACGTCCCGGGTCAGTCGGGGGTCTTGGCACACGAGACGTCCCAGCTGTCCTACACCTCCCCCTTCCTGAGCGGCCCCTGTCCGGTCTCTATATCCCGGGAGCGCAGACAGCTCCATCCACAGGAAGTGCAGGCGTGCGGCCCAGGTCACGCACGGGGGAAGCAGGGGGAATAGGCGAGCGGCTGCCAGAACACCCAGCGCCGACACCTTCGAGACCTGGGGGGGGCTACTGGGAATCGTGAGAGATTAATCTAACGCCACTGGCCACGACTGCCTGAACAAAATGGCTTCTCTCCTATCAGTCTGTGTACATCTCTCTAGAATCTTGCGATTGAATCTTGCGATTAGACCCTATAAAGattccttttctatttttgtactttttggtTCTTCCCCCGCCAACAGCAAACTGAAACAGTCGAACGAGGCAGCCCTTTagaggtgtgggggggagggtaACTATAAAATAACATGCCGAGGACCCCCCTCAACCCCGCACCCTGATGCTCTCCCTCTTCCCTGGGGGGCTTCCTGTGCCCGACTGACCGCTGCCCCTTTCGaaccacagagagaaaaaaacgtCAACGGCCAGTGAGCGTCTCGTATCATTGGCAGGGTAGCCGATGCGGCCCCCCAAGCTGCACGGGGGTCCGTGTCCCGCCGGTTCGGTCAGCCATCAGAAATTCAGTTGGCGACTCAGATTTCATGAcgacaagaataaaaataatagtcattaaaaaatttaaaacatgaaaaaattataacataaaatgacaataaaattaaaataaacaggcacCCGAATCCGGTCAGTGATTGGCCCGTCGGGGGTGAAGTTCCGGTTCTCTGGCGCAGCAGTCACGgaagaaggagggagggagggacagacgGACGAGTGTCGGGCACAGAGTGGAAGGCCGGgaccggggtgggggggggtgtcagAACAGGTTGAGGTAGGTGAAGAGCGCGGGCACGAGGAAGAGCGCGTTGAAGCCCACGGTGCCGTAGACGATGTAGCGGTACGGCAGCTCCACCTCCATGCGCTGGCGGGCCAGGCGCACGTCCTGGCACGGCACGTTGAACAGCCGGCAGGCCAGCGGGATGGTCAGCGCCTTCATGACAGCGCGGGTGGCCAGCAGCACCGCCACGCCCAGCACGAAGCGCAGCCCCGCCATGCCCACCAGGGCAGCGCTCAGGGGCGGCGGGGTGAAGGGCAGCTGCGACGGCGGCGCGTCGGGCATCAGGCCCAGCAGGTAGTTGAGGTGCGAGGCGCAGGCCACGCCGGCCCCGGTGCCCAGGATCTGCGCCGTGTCGCCCCGGGAGGTGCTCCAGGTGTCCAGGGTGAAGGAGAACAGCCCCATGCCCAGGTgcaggctgatgatgatgagcGGCGCGTAGCGGAAGGTCAGGTTGAAGCGGTCGATCATGTCCAACGCTGGCTGGAAGGCCACCAGGATCACGATGCTGTACAGGAAGCCCACGATGACGTCCTGCAGGAGAGCACAGGGCAGCACGGGTCAACATGGGGCAGCACAGGGCAGCAAACAGGACAGGGAAGCAGAGCACAgaagacacacactcacacaaggaaaaacacgttcacacacacacacacacacagcaacacagagcagacgcgcacacacacggACAGTAACACAAGCCCTCTGACTCTCATTCTCACGCACTCTCTCGCTCACACACCCAAAACCGCAGCGGATTTGACCGTCTGATGCTCTGTTCAAAGCACCTGGCTAACGATCTACATTTGCGTCGCTATGCTGCAGTGGCCGCGGCTCAGAGAGACACTAACCGCGGAAAACCCCTCCAaccaaaaacattcaaatcccGCCCCACACACAACAGAGGCAAATGCTTTTCCATGAGCTCTGACAGATTATACAGATTATCTGACGCAAGCTGCCTGCTGGTGGTTTAGCCAGAGGGGCCTAAAATCCACCGTGAGTAATATCTACACCTGTCTTTCTTCCTATCTCTCTTTCCATGTGTGTTAAAGAACATAAAACCATAAGAACGCAACAAGAGTCGCAAAGGAAAGCGATCTATGGGTCTCAGCTGCTTGTAGGACCCTGGGGTGTGAAACAGTGCCTCCTGTCCTCGGTCTCAGAAGCACCATCTACTCATGTCCGCTCGTGTCCCCTGAGCTGATAAGCGTTCACAGCCACATGTAACTAGATTTAATTCCTCAGTTcagatatgtttttaatcagtAGACAATATTGCATCCTCAAACAGGTTGTCACAGTAAAGAACATGCTACAGAtttagtataataaataaatacaagaccCTACCGAGTCTGTGGGGCCTACAGAGCCTTGTCAACCGctcctctcacacacacacacctacccCCCTGCAAGAAATTATAAAACTCCAGTAGAAAATCCCTAAAGTTCAGGTCATGAGAGAGGACTGGAGCAGCAGGCAAATGCCCTGCCAGGTGCCGCCGCACGCACAGCTATTAGGCAAACGCTTTCCTCCACGCCGGCCGGCTGCCCAGAGCCAGGAGCCGCGACTGGGCGCGTCTGGTTTCCTGTCCTACTTTCTGAGCGAGTATTGGCAATTTAaatgaaactgattttaaacacGCTCTACTCTAACCGACTAACTGAGACCGGAACAGCACAGCTGTTTAGGTTCACCTAAAAGCATTGCTCCTTATTGGCTTTACTTCACTCTGTTCCCCTCACAGATGAACCCTGGCCGACGGCTGAGGAGCCAGAGTGTGACGGAGGCCCGTTACCTCACAGCGGCTCAGCAGGTACCACTTACAGCAAAGGCACTGCAATGCATGCTGGGCTACCGTCGAGTCATTTACCCCAACTGTGCAGTAGTGCAGTACGTTCACTCGAAGGACAGTGTCTTTCTTTtgacataaaaagaaaaaacactaaacaaaaacatttactcaACCAGGCGATTACACAACCAACAGCTCTGAGACCGAGTGGCACAAAGTGCCCATCCTCCTACAGGCTTTGTTTGCGGACGTGACGCAATACAGACGCTCAATCACGGAGCTCCTGAACTCCGGCAGCGTCGTGTGAACAAGGTCACCCCCCCGGGGGCTGCCTGGTGTGGATGTGCGGTTTTGTTTCCATACAAATAGGAAACCCGTCTCTGGGAGGAATAACAATGGAAAAACGCAAAGGAAGCTCTACAGTCCGTCCCCAGGGCTGATTCATTGGGCCCCCGGCTTGAACTCGACCCCCGAGGGGCCTCTGCCCTGAGATAAGACGGACGCCGAGAACAACAACGACTGCAGAATCCAGTTCTCCTTCCCCAGtgggagcggggggggggggcactcaCGCTTCCTCCCCTGTGACGGGAAACACAGCCATCCTGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190357 True 4846 lncRNA 0.53 3 18863024 18868044

Neighbor

gene id symbol gene type direction distance location
AMCG00000587 rhoj,LOC107707080,LOC108257930,LOC107701469,LOC107743974 coding upstream 38346 18808614 ~ 18824678 (+)
AMCG00000569 NA coding upstream 172929 18678797 ~ 18690095 (+)
AMCG00000568 NA coding upstream 184910 18660117 ~ 18678114 (+)
AMCG00000578 NA coding upstream 204087 18654633 ~ 18658937 (+)
AMCG00000577 NA coding upstream 210506 18636125 ~ 18652518 (+)
AMCG00000594 NA coding downstream 18404 18886448 ~ 18923025 (+)
AMCG00000596 NA coding downstream 60622 18928666 ~ 18947466 (+)
AMCG00000595 NA coding downstream 82114 18950158 ~ 18991317 (+)
AMCG00000593 btbd6,btbd6b,LOC107718408,LOC106571711,LOC107701487,LOC107560384,LOC107755235 coding downstream 419129 19287173 ~ 19289424 (+)
AMCG00000605 srp54,LOC107729255,LOC107693187 coding downstream 514888 19382932 ~ 19387617 (+)
G151217 NA non-coding upstream 3560 18859263 ~ 18859464 (+)
G151052 NA non-coding upstream 477978 18384600 ~ 18385046 (+)
G151050 NA non-coding upstream 502732 18359247 ~ 18360292 (+)
G150953 NA non-coding upstream 778337 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 781683 18078114 ~ 18081341 (+)
G151226 NA non-coding downstream 51877 18919921 ~ 18921366 (+)
G151310 NA non-coding downstream 262581 19130625 ~ 19130890 (+)
G151339 NA non-coding downstream 437202 19305246 ~ 19307462 (+)
G151535 NA non-coding downstream 1181372 20049416 ~ 20049648 (+)
G151538 NA non-coding downstream 1248454 20116498 ~ 20116788 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 297397 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 332267 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 443448 18411443 ~ 18419576 (+)
G150976 NA other upstream 703703 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 1103442 17748510 ~ 17759582 (+)
G151522 gpr135,LOC107564991 other downstream 1101295 19969339 ~ 19972015 (+)
G151676 NA other downstream 1973894 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 2658826 21526870 ~ 21533538 (+)

Expression


Co-expression Network