G151557


Basic Information

Item Value
gene id G151557
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 20539072 ~ 20602476 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU190834
GGGGTAAAGGACTGCCATTTTTATTGGAGAGAGGATATGCCATCCAAGACATCTTacaggACAAACTCGAGTACTTTATTCACGGTGGGTTTCCAATTTGTTGTACAAAAGAAAAGATCACAAGCCAACATTTTGATTGAATGCGAGTCACTGAAGCCATaacttccaaaaaacaaaaaacaatcttcaaTGGCATCATATCTTGGGATGAGACATGACACTTTAAACGTCCCTCgtgggtaaaataaaaatggcgcatttacaaaaaaaaactggggGGGAGTagaagtatacaaaataaagttgaCTTTATCCTTTCCATCTATTGATtctgtatggaagagtggccgAAACTGATTGAAGTGAAGAACAAAAAGGGAAGTTTTGCTTCATTAAACAGTCAGCAACTTACAGTCTCTGCTCAGATTACTCAAACAGaactgagaaaacaaaaggaaagggGGGGACATTTGTATAGAAAAGGACTGTTCAAAACCCAGAGGGACTGCACTTCTAACACCAACACCACATTTACCAACTTCAACAGACATGGGGTGTGACTCCAACAGATCCCACCCCCCCCAGTACAAATGCTGGACAGCTAATGAACACTTTCTTGGAGACAGTCcagaatttaaaatgacatcGTGTCAATTTGAGTAACATTACGAAAGCCAAGTAAAAAGGACGAGACATTTGATATCAACTTTAAAAAGTCCCAAAGCAGTGGAGTGGGGATGTGTGTAAAAAGTGAACACGATACTTAAGGCGTCTTAATTATCTATTCCTTACAAAGGAACTATTCCTCCTCCGTGTCCATTTACAATCCTCTTCTGCTGCAAACAAtggcttttctctttcaaaggAGAGAGAGCTGAGCAGAGCCTCCGCCTGTGGCCCCCGTCGGGCCCATTTAGCGCCGCTTGTCCTTGCGCTCGGGTTTGCGCTCTCTCTCGCCGCGGGACGGCCGTTTCCCCGAGCGGCTGCCCTCCGAGACGGACCTCTTTCTGTCCGCCCTGGAGCTCTTTTCCTTGGAGCCCTTGGCGTCTCTGCTGCCGCCCTTGGATGACTTGTGGCTGCGCTCTGCTCCTGCCcctcccctcttcctctctctgtc
>TU190835
GGGGTAAAGGACTGCCATTTTTATTGGAGAGAGGATATGCCATCCAAGACATCTTacaggACAAACTCGAGTACTTTATTCACGGTGGGTTTCCAATTTGTTGTACAAAAGAAAAGATCACAAGCCAACATTTTGATTGAATGCGAGTCACTGAAGCCATaacttccaaaaaacaaaaaacaatcttcaaTGGCATCATATCTTGGGATGAGACATGACACTTTAAACGTCCCTCgtgggtaaaataaaaatggcgcatttacaaaaaaaaactggggGGGAGTagaagtatacaaaataaagttgaCTTTATCCTTTCCATCTATTGATtctgtatggaagagtggccgAAACTGATTGAAGTGAAGAACAAAAAGGGAAGTTTTGCTTCATTAAACAGTCAGCAACTTACAGTCTCTGCTCAGATTACTCAAACAGaactgagaaaacaaaaggaaagggGGGGACATTTGTATAGAAAAGGACTGTTCAAAACCCAGAGGGACTGCACTTCTAACACCAACACCACATTTACCAACTTCAACAGACATGGGGTGTGACTCCAACAGATCCCACCCCCCCCAGTACAAATGCTGGACAGCTAATGAACACTTTCTTGGAGACAGTCcagaatttaaaatgacatcGTGTCAATTTGAGTAACATTACGAAAGCCAAGTAAAAAGGACGAGACATTTGATATCAACTTTAAAAAGTCCCAAAGCAGTGGAGTGGGGATGTGTGTAAAAAGTGAACACGATACTTAAGGCGTCTTAATTATCTATTCCTTACAAAGGAACTATTCCTCCTCCGTGTCCATTTACAATCCTCTTCTGCTGCAAACAAtggcttttctctttcaaaggAGAGAGAGCTGAGCAGAGCCTCCGCCTGTGGCCCCCGTCGGGCCCATTTAGCGCCGCTTGTCCTTGCGCTCGGGTTTGCGCTCTCTCTCGCCGCGGGACGGCCGTTTCCCCGAGCGGCTGCCCTCCGAGACGGACCTCTTTCTGTCCGCCCTGGAGCTCTTTTCCTTGGAGCCCTTGGCGTCTCTGCTGCCGCCCTTGGATGACTTGATCTCTCTCTCGCTGGGATCTTCAAAGAAGCAAGTGACACgcatgtgttgttttaaaacgactttatttgaaaatgatacAGAGCCTTGCTCCagatacagtacacacatgTATAGCAATTTACATTGGCTTTACTAAAGCTTCTAGAAAGAATCCGGTTGTGTCTCATATATACTGGCCCATTTCAGCAGCGCTGTGAAGCCTGATTGCTACAAATTAGCATTTTCTAAACACATTCATTTCTCATGGCTCTGCTGGAAATGCAATCTGAGAAATATTTAATGACATGACACTATCTGAAAACAGAATATATCAATAACAATATTAACCACAATGATCAAAGCATTATACTGTACttattttcacagaaaacacaTGGCTGCTTTTTAACTGtcagttaatgaaaaaacagacaaaaacattgaaagcTTAAATGGTTCCGATTAAACTGTGTAACAGTCCTCATTCTGGAGTGTCTCAGTAACACTGTAACAGTAACAAAGGCACATTCCCTTTATGACCTCTGACCGGCTGCGTCTGTTCACTGTACTGTTAAGGGATCACAGACGTAACAGTAACTCCATGGCTTGGGAGGCATGGGAGATCAAGCGCAATGGAAAGAAACAGCCAGCCGTGTGTAATACTAAGCGTGTTGGAATCAAAAGTGCTTAACAGTTTAAAGAGTTCGACAAGCTGTAGGATCTGCTCTAGAAGGTCTTCAGGGTGACTTTGGAGAAGAAGGGCCTGCCCTGGCCATCGCCGAGGGATCCCCCGTACTCGAGCACGCTCCGCCGGATGTCCTTGATGGCCTTGCTCGGGAGTGTGGGCTTGAGGTACAGCAGGTGGCCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190834 False 1117 lncRNA 0.46 2 20539072 20540211
TU190835 True 1924 lncRNA 0.44 3 20539072 20602476

Neighbor

gene id symbol gene type direction distance location
AMCG00000622 jkamp,LOC106611187 coding upstream 558394 19979178 ~ 19980678 (+)
AMCG00000621 daam1,LOC106601075 coding upstream 571409 19931968 ~ 19967663 (+)
AMCG00000614 NA coding upstream 733873 19796784 ~ 19805199 (+)
AMCG00000620 irf2bpl,LOC106602196,LOC106611240 coding upstream 865177 19664561 ~ 19673895 (+)
AMCG00000616 NA coding upstream 895727 19624419 ~ 19643345 (+)
AMCG00000637 NA coding downstream 83609 20686085 ~ 20694291 (+)
AMCG00000634 cdc42bpb,LOC107684799 coding downstream 101212 20703688 ~ 20734204 (+)
AMCG00000648 NA coding downstream 206681 20809157 ~ 20810026 (+)
AMCG00000643 NA coding downstream 234103 20836579 ~ 20838280 (+)
AMCG00000642 ehd4,LOC107733091,LOC108430677,LOC105023592 coding downstream 252615 20855091 ~ 20869738 (+)
G151540 LOC103376870 non-coding upstream 385532 20153115 ~ 20153540 (+)
G151538 NA non-coding upstream 422284 20116498 ~ 20116788 (+)
G151535 NA non-coding upstream 489424 20049416 ~ 20049648 (+)
G151339 NA non-coding upstream 1231610 19305246 ~ 19307462 (+)
G151310 NA non-coding upstream 1408182 19130625 ~ 19130890 (+)
G151661 NA non-coding downstream 208974 20811450 ~ 20812290 (+)
G151675 NA non-coding downstream 238779 20841255 ~ 20841492 (+)
G151702 NA non-coding downstream 267708 20870184 ~ 20870411 (+)
G151706 NA non-coding downstream 314674 20917150 ~ 20917870 (+)
G151708 NA non-coding downstream 315466 20917942 ~ 20918538 (+)
G151522 gpr135,LOC107564991 other upstream 567057 19969339 ~ 19972015 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 1973445 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 2008315 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 2119496 18411443 ~ 18419576 (+)
G150976 NA other upstream 2379751 18153864 ~ 18159321 (+)
G151676 NA other downstream 239462 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 924394 21526870 ~ 21533538 (+)

Expression


Co-expression Network