G151775 (ap4s1)


Basic Information

Item Value
gene id G151775
gene name ap4s1
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21487732 ~ 21567174 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191090
CCGCCTAGAGGACCGTCCTGCACGGCGAGAACTGCGCTCTCGGGTCTCCGTCTGGATCTCCTGCTCTGCGCCTCGGCATCCGCGCCCGAGTCTCCCGGAGACGCCAGCTCCACACACCACAGTGCTCCTTCGTCGAATACAAGGACTTCAAGCTCATCTACCGGCAGTACGTGGCGCTGTTTGTCGTGGTTGGGGTGGACGACACAGAGAACGAGCTCGCAGTGTATGAACTTGTACACAACTTCGTGGAGGTGCTGGACAAGTACTTCAGCAGAGTGAGTGAGCTGGATATCATGTTCAACCTGGACAAAGTGCACATCATCCTGGATGAGATGATCCTGAACGGGCGCACTGTGGAAACGAACAAAAGCCGGATCCTGGCGCCGCTGCTGGCGCTGGACAAGATGGCGGAGAGCTGAGCTGGGCGTGGCGGCCGGGGGAGGAACGCCACGCGGCCTCGGTCTGCGCAGCGGTGTGGCGCGCTGGGCAAAGCGTTCTCCTACGTGGCCTGTCGGCTGGGCCTGGAGGAGCCCCcaccctgctgggttttgttccaaccgagctccattacttaattgaactaatttcctaaatcagtgccttttaattatacaattctatacttaaaacCCTTAAGTTTACAAAGAACTTAAACAACAAGCTCTTTTATCACATAATttaaagtcaaatctaagcagacttacttcaattaagggatcAATGAAGTAATCGAGAGCTCGGTTTgaacaaaagccagcagggGAGGGGCTGCTCCAGGACTGGTCTAGGGCAAGAAGATCTGAATCACCATTATTGATTAGTGTTaaaagtgttaaataaaattgaGTTTTCTGTTGTTGCTAAAAGTTGTGAAATGTGATTTGTAAGAATGTCTGTTTGGACGTGTATTCATGGACCCCTGAAATAAACCCCCCAGAGAAAAGAGGACAACAATGGCTATACTTTGCAAAcaatttaatgattatttttggagcatacacatttgaaaatattttgtttacttcaAACCGCAACTtgagttaaataaatgtttataatatacaaagaaaatacaagggAAAGCTTAGCTTGCTTTAAACGTGCCTTTGCACCTAGAACCAGTGTCTGTTTCGCTTTTCTCTAGAGCGGTACTGTAAAATGACACAAATGCACTCGGGGTGAGATCTTCACAGCAGGGCATGAAGGAACCAAAACACGCACACGGGAACGGAAGCCAAACGGGTAAAGAAAGCGTGTGCATGATCCGACAGGGGCGGCTCTAATACTCGGACGGCGCGGGCGCTAGGAGAAGTGAAACCAGTCCGGGGGCCGCCTGCCCGCTCTACAGCAGCGGACCTACAGAAGCAGACGCTCGCCGCGGCACGCCAGGCCGGcgtggggggcagggggggctgTAGTGAAGCCAGACGCCCACTGGCAGACGGTCACAGGGAGCCTCACGCAGACGCTCGGGGGCGGAGATGAAATGGTGAACACTGAACGCACGGACACGCCGCCCCAGATTCCGGTCTCGCAAGCCCTTGAAGCAGCACGGTGCGCTGTGCCCGTCGGCTGCGTGGTCAGCAGCAGCTAGTCGAGTTAATACGGAACTTTTTTCCTAAAGCTtttgggaaaaaagaaaaaaaaaaaaagtctcatcAGAGCACagctgggatttttttttttgtttttttttttgtttttttttttgtttttccttcctgcaacaaaacacaaccGGCTCCTCCTCCAGGATCGAGTTCAGCtccgtctgtccgtccgtcCTCGGGTTGCGCCGGCGGCTCAGTTCAGGTGGAAGCCCTTCTCCATGGTGGCGGCCAGCAGCCGGTCCCTCATGATCTCCTCTGAGGAATACTCGGGCAGCTTCAGGTAGTGCACACACGTGTTCACCGACGGGTAGCTGGAGTCTGTGGCGTCCACCTGG
>TU191091
CtgcagaacaaaacacacaggatATAAAATGTGTGAGGAGGCATACATGTTTATTGCGGGGTTTTTTTCAGGTACaccatttaatatttattatagacattttatatacatgacTTTGCAACAGCTGTACTTCTGCTATGTGGTACAATCGTTAAAATTTCACTGATTCAtagtttgtaaaacaaaaaccttacAAAACTCATCAAAACTCGCAAACTGAtcagaaatcttttttttttgtgtggaagaCTAGAAAAAATACTTCATTGTATTAATCATgcattacacaaacaaaaaaatatcttgTTACACCATAAACTGAAgcgttttttaaaaataaaataatgacagcGGGGAAGTCGCAACCCAGACCGGACAGCTGGTGAACCGTGGTGTGCGTGGGAAGACGCCACTGCGATTCCCCgagttgaaacaaaaaaacgaaactaaaactctctctctctctccatccctccctccgtTTTCTAGGATCTTCCTGCAGTTTACGGGGCCAGATCAGTCCCCACTATGAGATAAACAATCTTGGTTTGCACTTAAAATCAGCGGTTTCTATGAACTTGTGGTCTTCGTTTGCCGTTCGCCTGCCGGAGCCCCATCCTGGACAGAGTCGCCCCCGTTCCTTCGCGCtcaattcacaaaataaaaaaggactaAACAGaaggtgaaataaataacaggccAATAGCATTAAGATGTCTAACCCGTGATAAATAAACTTGTAAATACAGTAAGATGTACAAAAATATCACATAGTGATAGGATGCTgcgatttatttttaaaagagttCGCAGGGAGAACTGGAACtccgtttttatttttctttacttaatTGGTTTCCTAAAGTCCTCAATCGATGGATAAAGACGGTTTTAAAGCAACGTGAGAAATAGCATCCGTACGTTTGCACGAGCCGAGGTCTCGGAGATGTCGGGGGTCCGGGGGGTCTGTGAGCCGGGTCTCTGCGGATAAAActctggtctttttttttttcttttttctttttttaaacaaacattttgagCCGTGACAGGCCTGTTGTATATAAAAAAGCTTATAAAAActagaattttgtttttttcttgaacgcaaaaaaaaaaaaaaaaaatgtttcatgaaaCTAATGCTAAAATATTTAGTCAATTTAAaacgttttcattttttccccataaTGCTAGACGATTCAGAGGGCCGCTCGTGAGCTCGTTAACCAACTGACGGACGCCGACCGGATCGTGCCGCTGAGCCGTGAGCTCACCGCCCCGAGCGGCACCACGGCCCGGTCCCTAAGGCCGCACAGAGTCCAGACAGACCCGGGTACAAATCAGACGCCACGTTCACTCAAATACACCTACATAACAGATATCAGCTCGGTTCAAACCCAGTCAAGGCTACAAATACTGGTTTCCTGCTTTAACTTACAGTAATTACAGTTAAATGAATtagtttgaaattattttattcaaagacGCTGCCGAGAACCCCGCCTCCCGGTTCCTCCCCCGTCCGGCTGCTGGGCCCGGCGGAGGGGCCGCCCCGATGTAGTGTCTGAACGGCGCGGGTGGCTCGGGGTGCAGGCCTCTCCTCCGTGTCTCACCTGCGGGTTCAGGGGGCGGGAGGTGCGGCTACACGAACACCTTGGCCAGGGCGTCGGCGCCGGCGCTGGCGATGTACGCCTTGGACGGGTGGAATGCCACGTCATAGATGGACTCGTCCGACTTCTTCCGGTGGGCTGTGATCTCCTGGACGCAGGTCTTGCTGTCAAGGTTCCAGAGCCGGATGGAGCAGTCGTggcctgggggtggggggggggagagagagacgtgaGGAGGCGAG
>TU191092
TTCAGGTACaccatttaatatttattatagacattttatatacatgacTTTGCAACAGCTGTACTTCTGCTATGTGGTACAATCGTTAAAATTTCACTGATTCAtagtttgtaaaacaaaaaccttacAAAACTCATCAAAACTCGCAAACTGAtcagaaatcttttttttttgtgtggaagaCTAGAAAAAATACTTCATTGTATTAATCATgcattacacaaacaaaaaaatatcttgTTACACCATAAACTGAAgcgttttttaaaaataaaataatgacagcGGGGAAGTCGCAACCCAGACCGGACAGCTGGTGAACCGTGGTGTGCGTGGGAAGACGCCACTGCGATTCCCCgagttgaaacaaaaaaacgaaactaaaactctctctctctctccatccctccctccgtTTTCTAGGATCTTCCTGCAGTTTACGGGGCCAGATCAGTCCCCACTATGAGATAAACAATCTTGGTTTGCACTTAAAATCAGCGGTTTCTATGAACTTGTGGTCTTCGTTTGCCGTTCGCCTGCCGGAGCCCCATCCTGGACAGAGTCGCCCCCGTTCCTTCGCGCtcaattcacaaaataaaaaaggactaAACAGaaggtgaaataaataacaggccAATAGCATTAAGATGTCTAACCCGTGATAAATAAACTTGTAAATACAGTAAGATGTACAAAAATATCACATAGTGATAGGATGCTgcgatttatttttaaaagagttCGCAGGGAGAACTGGAACtccgtttttatttttctttacttaatTGGTTTCCTAAAGTCCTCAATCGATGGATAAAGACGGTTTTAAAGCAACGTGAGAAATAGCATCCGTACGTTTGCACGAGCCGAGGTCTCGGAGATGTCGGGGGTCCGGGGGGTCTGTGAGCCGGGTCTCTGCGGATAAAActctggtctttttttttttcttttttctttttttaaacaaacattttgagCCGTGACAGGCCTGTTGTATATAAAAAAGCTTATAAAAActagaattttgtttttttcttgaacgcaaaaaaaaaaaaaaaaaattctcatcAGAGCACagctgggatttttttttttgtttttttttttgtttttttttttgtttttccttcctgcaacaaaacacaaccGGCTCCTCCTCCAGGATCGAGTTCAGCtccgtctgtccgtccgtcCTCGGGTTGCGCCGGCGGCTCAGTTCAGGTGGAAGCCCTTCTCCATGGTGGCGGCCAGCAGCCGGTCCCTCATGATCTCCTCTGAGGAATACTCGGGCAGCTTCAGGTAGTGCACACACGTGTTCACCGACGGGTAGCTGGAGTCTGTGGCGTCCACCTGG

Function

symbol description
ap4s1 Involved in central nervous system neuron axonogenesis. Predicted to be located in membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in central nervous system. Used to study hereditary spastic paraplegia 52. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 52. Orthologous to human AP4S1 (adaptor related protein complex 4 subunit sigma 1).

NR:

description
PREDICTED: AP-4 complex subunit sigma-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191090 True 1945 lncRNA 0.52 5 21558850 21567174
TU191091 False 1855 lncRNA 0.46 2 21487732 21529378
TU191092 False 1354 lncRNA 0.42 2 21527590 21567174

Neighbor

gene id symbol gene type direction distance location
AMCG00000649 NA coding upstream 10314 21469843 ~ 21477418 (+)
AMCG00000641 foxg1,LOC106611199 coding upstream 247802 21238713 ~ 21239930 (+)
AMCG00000654 NA coding upstream 566335 20920718 ~ 20921397 (+)
AMCG00000650 NA coding upstream 570587 20879319 ~ 20917145 (+)
AMCG00000642 ehd4,LOC107733091,LOC108430677,LOC105023592 coding upstream 617994 20855091 ~ 20869738 (+)
AMCG00000671 nubpl,LOC107719449,LOC107561549,LOC107697759 coding downstream 69576 21636750 ~ 21650005 (+)
AMCG00000662 arhgap5,LOC106611209 coding downstream 116441 21683615 ~ 21687385 (+)
AMCG00000665 NA coding downstream 120941 21688115 ~ 21701292 (+)
AMCG00000664 NA coding downstream 144516 21711690 ~ 21716183 (+)
AMCG00000666 NA coding downstream 180173 21747347 ~ 21753688 (+)
G151752 NA non-coding upstream 346272 21141186 ~ 21141460 (+)
G151709 NA non-coding upstream 568332 20918699 ~ 20919400 (+)
G151708 NA non-coding upstream 569194 20917942 ~ 20918538 (+)
G151706 NA non-coding upstream 569862 20917150 ~ 20917870 (+)
G151702 NA non-coding upstream 617321 20870184 ~ 20870411 (+)
G151804 NA non-coding downstream 28664 21595838 ~ 21598156 (+)
G151676 NA other upstream 644269 20841938 ~ 20843463 (+)
G151522 gpr135,LOC107564991 other upstream 1515717 19969339 ~ 19972015 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 2922105 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 2956975 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 3068156 18411443 ~ 18419576 (+)

Expression


Co-expression Network