G151782 (strn3,LOC106611207,LOC107590905)


Basic Information

Item Value
gene id G151782
gene name strn3,LOC106611207,LOC107590905
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21536231 ~ 21542398 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191101
CGCAGTTCTGAGGCGATAGACACAGTTGGGGGGGAAACTGCTGGAGTCAGGGTTGCTGTGGCGAATCTGGAGTACTTACATCATAGCTGTAGTCCGCGTCGTTCGAAACAGTCAGGTCTGCCAAGTCTCCCAGACCCAGCACGCTCTCCAAGACGTCATCAGAGCCCATAATAAAGGACTTGCCGCCGCCAGATGGAAATGTTAAAGGCTcagCCCATTCTGTTCCGTCCCCTGAACTACGGGCCTCCCCGGCGCCCTCCCCGTCCTCCGCCGTCACGAGGAAGTCGAATTCCTTCAGGGCCTCTTCGGTGTCGGGGTCGTCCGGAAGGTCTGCCGCCAGTCCCTCATTACCGATcttgattttgtgtttcttgtttattCTGTGCGTCTCCTTGCCGTCCGTGATGTCATCTACCAGGTCCCCCTCCTCTTCGTCCTCTTCGTCACTGTCATCTGCGTTTTCTAAGAAGTTAAACGTTTCCAGAACATCGCCTGGATTCCTTTTTACATCCTGTCCCTTTTGTTTGGCCGGAGACTCTCCCCCATTGAGGATCTGCTCCAGGTTCTTGGTCTCTACGGAGCCATTCTGCTCAGAGCCCGACAACCCCAGCAAAGAGCGCACCCTCTGAGACCGCACGTCTAGTATTGTGTCTGTATAACCTACTTCCTGAAGATAT

Function

symbol description
strn3 Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Is expressed in somite and tail bud. Orthologous to human STRN3 (striatin 3).

NR:

description
PREDICTED: striatin-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191101 True 677 lncRNA 0.54 4 21536231 21542398

Neighbor

gene id symbol gene type direction distance location
AMCG00000659 NA coding upstream 9753 21516642 ~ 21526478 (+)
AMCG00000658 NA coding upstream 21909 21509374 ~ 21514322 (+)
AMCG00000657 scfd1,LOC107697716,LOC107719485 coding upstream 29041 21477919 ~ 21507190 (+)
AMCG00000649 NA coding upstream 58813 21469843 ~ 21477418 (+)
AMCG00000641 foxg1,LOC106611199 coding upstream 296301 21238713 ~ 21239930 (+)
AMCG00000660 ap4s1,LOC107582370,LOC107733114 coding downstream 16115 21558513 ~ 21565648 (+)
AMCG00000671 nubpl,LOC107719449,LOC107561549,LOC107697759 coding downstream 94352 21636750 ~ 21650005 (+)
AMCG00000662 arhgap5,LOC106611209 coding downstream 141217 21683615 ~ 21687385 (+)
AMCG00000665 NA coding downstream 145717 21688115 ~ 21701292 (+)
AMCG00000664 NA coding downstream 169292 21711690 ~ 21716183 (+)
G151752 NA non-coding upstream 394771 21141186 ~ 21141460 (+)
G151709 NA non-coding upstream 616831 20918699 ~ 20919400 (+)
G151708 NA non-coding upstream 617693 20917942 ~ 20918538 (+)
G151706 NA non-coding upstream 618361 20917150 ~ 20917870 (+)
G151702 NA non-coding upstream 665820 20870184 ~ 20870411 (+)
G151804 NA non-coding downstream 53440 21595838 ~ 21598156 (+)
AMCG00000661 NA other upstream 2693 21526870 ~ 21533538 (+)
G151676 NA other upstream 692768 20841938 ~ 20843463 (+)
G151522 gpr135,LOC107564991 other upstream 1564216 19969339 ~ 19972015 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 2970604 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 3005474 18489851 ~ 18530757 (+)

Expression


Co-expression Network