G151804


Basic Information

Item Value
gene id G151804
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21595838 ~ 21598156 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191123
tgaaaagagaaaaattaGGCTTTATTTCTCAAGtatattagaaaacaaacattgttaGGATTCAGGTCAAATGGTTAAATCTGTACAATTTACAATGTTACGTACAAAATACTCCTTCAGCCTACACATCTCATATGTTACAGAGTTTTTGCTGTGATCAAAGTGCTTCAGAGCTCTGGAAAGCAGGAAACAGCTCACTTCCTCAGCTTCGTCCTGCCAGGAATCACAGCAAACCACTTTCCTGCAGTAAGATGTTAGCAAACAATGTCCAAATGTCTTCTAATTTGAAGTTAGAACTAAAAACAAGTACTTTAATGGCACAGCAACACTAAATGACAGCCACACATGTCCATTAACAACGTCCCTTAAACAATGACCAGTGAGAGCCCAGCAAAGCAGTTTATTCTTCACAGTGCGTTCTGTACCGGACAAGAATAACCTGCCAACAAAACCAGTTCAGAGAATTTGATTCAATCAGgaacaacccccacccccagcaaAGACAATTAATTTAGCAACATCTGAGGAGAAACACTAATTGTTGGATATtgcatccattaaaaaaaattgtggcCCCAACTCCGAGGGTGAAAGAGTGCAAAAAGACTGGAGCGCTCGTGATTTACTGCCACGTGTGAAACATGTCCCATCATGCTTTGCCTCGCAGTGACAGTCAATACGCCGTAAAAACCCTGCACAAACGGGCAAGATCGATTGAGCAGAGCAGCACAATGAGAGAGGGCTCTGCTGACAGGAAATGTCTACAGACTACAGAGTGTTTTCTGCTCTAAATTGTGTGAAAACTGTTGAGAACAAGGTTTCTCAGATGTTTTCAGAGTTTGCTGCTGCGGCCACATTtcacagtgtttaaaatgtctccAGATGCGTTTCGGCAGGATTGCAAATCAAAGCAAACTTTTAACAAGTTCTTTACAGTCCTTTTGGAGACCAATTGAACCCAATTAACCCACCAGCCCGTTTCATTCTTTAAGGAAGGTTTGGCGTGGATTCGGAGGCCTTTAATCAGACTCTAATCAGAATTTCGATCGTCCTATTGgtgcatccctctctctctctcttttgatcTTTAAGAGGAATAAACTCAACAGCAACACTACAGAAATGTCCGCGCTTGCCTCGTTAGCCTGCTGGTCATATGAGATCACTCTGGATCTCTGTACTGGTGCTGCTGCAGTCTGGGGCCCAGTCCTGATGTTACACAACGTGGGTGAACCACTGTCACAACGTCTCGGTCTACCGCTGTTTTTAACACCAGAGTGAGAAGAGCTCCTGGGAAGAACCGCTTTGATCGGTGCCGTCACAAACCCAGTCCCTTCACCCTGATCTCCACTTTCTCTCAACACTCTCTCAGTGTTTTAGATCTTTCAAAGAGGTTTGCCAGCCTTCAGTCTGAATCTAAGCAGGTACCGTCTAAAGTTAGAAAAATAGGAAAAtcacttgaaaaaataaaaataaaatctgtctgAACATGTTTTGGCAACCTAGTGTGGAGAGGAAAAACAAGATCACAAATCATACGTGTGCCGTTAGTGTTACATGAACGTGACAATGTGAAGAGCGCCACCGTGTGGAGTGAAGAGCGGCGTCCGGGGGAAGGCCACGCCGTCACAGGAAGTTGGTCTTGAGCTGGATGCTGGGTGAGCTCTTGCCGGGCGCCTGGCCCTGTTGGCCGGCGCTCTTGGCCTTCACGCTCTCCTGATTGCCCCTGACCGCCGCCTCGAGCCGCGCCTTCATGGCGGGGGAGGCGGCCATGAGCGCCCGGAAGACGGCCGTCAGCTCGGCGGCGCTCTGGGGCCGGCGCTTCTCCACGCCCTGCAGGCCGCCCACGATGCCAGGGCCCAGTGCCCGCATGAAGGGCACCGCCACAGCCGGGCAGGGGCTCTGGAACACGGACAGCAGCAGCTGGTAGGTCTTCGCCAGGACCTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191123 True 1949 lncRNA 0.48 2 21595838 21598156

Neighbor

gene id symbol gene type direction distance location
AMCG00000660 ap4s1,LOC107582370,LOC107733114 coding upstream 30190 21558513 ~ 21565648 (+)
AMCG00000659 NA coding upstream 69360 21516642 ~ 21526478 (+)
AMCG00000658 NA coding upstream 81516 21509374 ~ 21514322 (+)
AMCG00000657 scfd1,LOC107697716,LOC107719485 coding upstream 88648 21477919 ~ 21507190 (+)
AMCG00000649 NA coding upstream 118420 21469843 ~ 21477418 (+)
AMCG00000671 nubpl,LOC107719449,LOC107561549,LOC107697759 coding downstream 38594 21636750 ~ 21650005 (+)
AMCG00000662 arhgap5,LOC106611209 coding downstream 85459 21683615 ~ 21687385 (+)
AMCG00000665 NA coding downstream 89959 21688115 ~ 21701292 (+)
AMCG00000664 NA coding downstream 113534 21711690 ~ 21716183 (+)
AMCG00000666 NA coding downstream 149191 21747347 ~ 21753688 (+)
G151775 ap4s1 non-coding upstream 28664 21487732 ~ 21567174 (+)
G151782 strn3,LOC106611207,LOC107590905 non-coding upstream 53440 21536231 ~ 21542398 (+)
G151752 NA non-coding upstream 454378 21141186 ~ 21141460 (+)
G151709 NA non-coding upstream 676438 20918699 ~ 20919400 (+)
G151708 NA non-coding upstream 677300 20917942 ~ 20918538 (+)
AMCG00000661 NA other upstream 62300 21526870 ~ 21533538 (+)
G151676 NA other upstream 752375 20841938 ~ 20843463 (+)
G151522 gpr135,LOC107564991 other upstream 1623823 19969339 ~ 19972015 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 3030211 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 3065081 18489851 ~ 18530757 (+)

Expression


Co-expression Network