AMCG00000683 (unc80)


Basic Information

Item Value
gene id AMCG00000683
gene name unc80
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 138105 ~ 143895 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000683
ATGGTGGCCAGGCTGAGGCGGTACGCCGACGTGGAGGTCCCCACCGTGCTGATGGAGAAGCTAAAGAAACAGACGCTGGCTCTGGAGTCAGCCTCTGCAGCCCGGGACGAGATAGCCGCCATCGCTGCCCTAGCCACCTCCCTGCAGGCCCTGCTCTACAGTGTGGAGGCCCTCACTAGGCCAATGACTGCGCCCCAGATGAGCCGCTGTGACCAGGGCCACAAAGGGGCCACAACTGCAAACCACACCATGTCTGGAGGGGGCAATACGCGGGATAACCTGCACTTGCTGGAGGAGGGTCAGTGTGTCCCCCGCGAGGAGCTGGACGAGCGCATCGCCCGGGAGGAGTTCCGGCGCCCCCGAGAGTCCCTGCTCAACATCTGCACCGAGTTCTACAAGCACTGCGGCCCGCGGCTCAAGATCCTGCAGAACGTGGCCGGGGAGCCCCGCGTCACGGCGCTGGAGCTGCTGGACATCAAGTCTCACATGAGGCTGGCAGAGATCGCTCACTCCCTGCTGAAGTTGGCCCCTTACGACACTCTGACCATGGAGAGCCGGGGCCTGCGGCGCTACATCATGGAAATGCTGCCCATCACAGACTGGACTCTGGAGGCGGTGCGGCCGGCGCTCATCCTCATCCTGAAGAGGCTGGACCGCATGTTCAACAAGATCCATAAGATGCCCACTCTGAGCCCCCTGTCTCCTCTCCTGCCCCATCCCCCGACCCTCTCTAGACGACAGGTTGAGTGGGAAGCGGCCAGCAGCCTAATTGAGGGCATCTGTCTGACCCTGCAGCGCCAGCCAATCATCTCCTTCCTCCCCCACCTGCGCTCGCTCATCAACGTCTGCGTCAATCTGGTGATGGGAGTGGTGGGACCGTCCAGCGTGGCCGACGGGTTACCATTGCTCCACCTGAGCCCCTATCtttcccccccactccccttcAGCACGGCGGTGGTGAGGCTTGTGGCTCTACAGATACAGGCTTTAAAGGATGACTTCCCTCTCAGTCATGTCATCTCCCCGTTCACCAATCAGGAGAGGCGGGAAGGCATGCTGCTGAACCTGCTGATTCCCTTCGTGCTGACCGTCGGGTCGGGCAGCAAAGACAGCCCTCACCTGGAGCAGCCGGAAGTCTTCCTCCTGCTGCACACAGTCATCAACATCCTGCTGCCGCCCCGCATTATTGGCACCTCCCGCAGCAAGAACTTCCTGCTGGAGAACTCTCCGGCTCACTGCTCCACCCCCGGAGACCCTGGCAAAGACCTGCGCCGGGAGGGCCTCGCCGAGTCCACTAGCCAGGCGGCCTATCTGGGTATGAGCAAAGGCAGCGGGGGCTCGGGGGCTGGCCAATAA

Function

symbol description
unc80 Predicted to enable cation channel activity. Predicted to be involved in cation homeostasis. Predicted to be part of cation channel complex. Predicted to be active in axon.

NR:

description
PREDICTED: protein unc-80 homolog isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000683 True 1356 mRNA 0.63 9 138105 143895

Neighbor

gene id symbol gene type direction distance location
AMCG00000681 NA coding upstream 97509 38752 ~ 40596 (+)
AMCG00000680 NA coding upstream 111824 21907 ~ 26281 (+)
AMCG00000694 NA coding downstream 223681 367576 ~ 414428 (+)
AMCG00000695 cps1 coding downstream 270549 414444 ~ 414795 (+)
AMCG00000702 vwc2l coding downstream 967986 1111881 ~ 1133185 (+)
AMCG00000705 NA coding downstream 1082422 1226317 ~ 1233934 (+)
AMCG00000708 NA coding downstream 1104846 1248741 ~ 1249425 (+)
G125516 NA non-coding upstream 8978 128859 ~ 129127 (+)
G125510 pofut2 non-coding upstream 20803 116111 ~ 117302 (+)
G125485 NA non-coding upstream 45485 92283 ~ 92620 (+)
G125484 NA non-coding upstream 46820 91043 ~ 91285 (+)
G125565 NA non-coding downstream 210593 354488 ~ 355729 (+)
G125597 NA non-coding downstream 312607 456502 ~ 487203 (+)
G125605 erbb4,LOC107555909,LOC107741926,LOC107662043,LOC107721020,LOC107660610 non-coding downstream 386004 529899 ~ 531912 (+)
G125612 NA non-coding downstream 431395 575290 ~ 575492 (+)
G125613 NA non-coding downstream 452892 596787 ~ 597135 (+)
G125561 NA other downstream 195745 339640 ~ 403591 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other downstream 1455801 1599696 ~ 1606031 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 1524950 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 1661512 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 5317406 5461301 ~ 5465981 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01071143_00000501_00001151 UNC80 coding CI01071143 null 435 ~ 1151 (-)