AMCG00000686 (pofut2,LOC107741944,LOC107660604,LOC107565035,LOC107714363)


Basic Information

Item Value
gene id AMCG00000686
gene name pofut2,LOC107741944,LOC107660604,LOC107565035,LOC107714363
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 112162 ~ 119898 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000686
ATGCAGCAGGTCTCCCAGGCTGCTGGCCTCCAGGACCAGACACACGGGCCAACAGTCCTCACCAGGTGGTCATGCTTACAGACCTTGGTGTGGAAGCCCAGCCTGCACAGGAAGTCTTTGGCCTCCAGAGTGAGCCGCTGCCGGGTGCTGAGCGCGGTGCCTGCTGGGACGGGTGGGGAAGTGCGTGGCTGGGCATCATGGCGGAGGCTGCGCGGTGCCTGTGCGGGCGGCCTCGGCTCGCACTGTGCGTGGCTCTGCTCTACTGGCCGGCGTCACGGCCGAAGATGGAGCCTTCAGTGCCGGCCAGTCCGTCTTCAGCGCCTCGGCAGCCCGGGACACACGGGCGGCTGGGTGTTGGTGCTGCCGCCCTGGGGCCGCCTCTACCACTGGCAGAGCCCCGACATCCACCAGGTGCGCATCCCCTGGGCTGACTTCTTCACCGTGGACAGCCTGGGCGCCAACATCCCCGTCATCGAGTACGAACAGTTCCTCGCCGAGTCGGGAGGCCCTTTCATTGAGCAGGTGTTCGTCCTGCAGAACTACGCCGAGGGCTGGACTGACGGCAAGTGGGACGAGAAGGTGGACGAGAGGCCCTGCATCGAACGCCTCATGTACTCTAAGGACAAGCAGGGCTACTACAGGGGCTGGTTCTGGGGGTATGAGGAGACTCGGGGTCTCAACgtcagctgtctgtctgtccagggCCATGCCTCCATCCTGGCCCCGGTCCTGCAGGGGAACACCACGGCTCGgTCAGTGATGGTGGACAGAGCAGAGACCGTCCTCCACGACCACTATGCCGGGAAAGACTACTGGGATACCCGGCGCAGCATGATCTTCGCCAGACACCTGCGGGTCGTGGGAGACGACTTCCGAGCCAAATACCTTGACTCCACAGACGAGCGAGACCAGACCGTTTACAGCGAGGACTGGACACAGATGAGAGCGAAGCTGGGCAGCGCGCAAGGGGGCCCGTACCTGGCGGCCCACCTACGCCGGAAGGACTTCATCTGGGGCCACAGGGAGGACGTGCCCAGCCTGCAGGGCGCCGTGAAGAAGATCCGCGGCATCATGAAGAAGCACAAGCTGACCCGAGTCTTTGTGGCCACAGACGCCGACGAGGAAGAGCTGGCGGAGCTGAAAAAGCTGCTGCCGGAGATGGTGCAGTTCGAGCCCACGTGGGAGGAGCTGGAACTCTTCAAGGATGGAGGCGTGGCCATAATTGACCAATGGATCTGCGCACACGCCAGGTATTTCATAGGCACGTCTGTGTCCACGTTCTCCTTCCGCATCCACGAGGAGAGGGAGATCCTGGGCTTCGACCCTAAGACCACCTACAACCGCTTCTGTGGCGACGAGGAGCTGGACTGCGAGCAGCCCACCCACTGGAAGATCGTCTACTGAGCCTCACCCGActgaccccaccccccaccaggACACAACGTGCTGCTTTCATCAGAGACCCCCGTGTTTTCATCTCAATGACACAGGCTGGGGGAGCCGGGTGGCGCTGGGCAGGATGACAGAGCGTCTTCGCAGCACAGCCTCCTTTAAACTGAGGACACGGCATGGGGCCGAACCCCGTCTGACCTTTTCTTATTAGATAATAAAGACTCTGCCCCACATGCGTCAAGCTCAAGGTCATGCCACTACATGAGGATGCGTTTGTGTCTGCTCCGtattgtgcttggtgttttgccACATCGTCTCGCCGTGAGGACCGCTCATTTAAGTCTGGGAGGGAAGGGAGATACCATTGCTGGCACTACACCCTGGCCAGAGAAATGTAACGTGTGTGAAACCTGGCCCACGACCCCAAACCACGGTCTTTCTCTGTCAGAAGCCACTCGCTGGTCCCCGAGTCTCAGCCGCTCGCAGGAGTGATTTCTCAGTCCGGGGATCCCCGCTTCGAGCGATGTGTTATGAAAACGAGCAGGTGTGGTGCGGGAGTGCAGAACATGCTTCACCGCAGCGGGGGACACTCTGATGTCCGGCACTCGGGCCCTAACGACTGCCAAACATTTCCTATAATCATTGCCACTTCTCAGCCAcgcgagtgagagagagtgggcGGAGAGAGAGTCGTACCGTTCAGATTCGGCTTTAGGTTCTCTCTGCAGTCCGTCACAATGCTCGATCCTCCTGTCCTGTCAGCGGAGTCACAGCCCGAAGCGCTGCGAGGCCGTCGTTTTGACTTGTCATGTTGAGGTGCTCACTGCCGTTTTCAAGCACCGTTCCATGCAGCAGGCATGACACGACAGCCAGCtgacagaaacacatttattccTTTACAATTGttcatttaacactttttttaataagaGAATTATTGA

Function

symbol description
pofut2 Predicted to enable peptide-O-fucosyltransferase activity. Predicted to act upstream of or within fucose metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human POFUT2 (protein O-fucosyltransferase 2).

NR:

description
PREDICTED: GDP-fucose protein O-fucosyltransferase 2

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000686 True 2333 mRNA 0.60 11 112162 119898

Neighbor

gene id symbol gene type direction distance location
AMCG00000684 NA coding downstream 1638 100069 ~ 110524 (-)
AMCG00000685 NA coding downstream 21917 87659 ~ 90245 (-)
AMCG00000682 ramp1 coding downstream 35826 66652 ~ 76336 (-)
AMCG00000689 NA coding upstream 11735 131633 ~ 142509 (-)
AMCG00000688 unc80 coding upstream 25881 145779 ~ 192328 (-)
AMCG00000690 NA coding upstream 187583 307481 ~ 329049 (-)
AMCG00000692 acadl coding upstream 212325 332223 ~ 338261 (-)
AMCG00000693 NA coding upstream 219835 339733 ~ 348410 (-)
G125498 NA non-coding downstream 19507 92283 ~ 92655 (-)
G125497 NA non-coding downstream 20877 91051 ~ 91285 (-)
G125515 NA non-coding upstream 1382 121280 ~ 127663 (-)
G125578 NA non-coding upstream 255922 375820 ~ 376770 (-)
G125591 NA non-coding upstream 289717 409615 ~ 410817 (-)
G125622 NA non-coding upstream 403623 523521 ~ 527501 (-)
G125625 NA non-coding upstream 478086 597984 ~ 598335 (-)
AMCG00000687 map2 other upstream 74746 194644 ~ 244177 (-)
AMCG00000710 myo1b other upstream 1187923 1307821 ~ 1312408 (-)
G125814 NA other upstream 1266945 1386843 ~ 1422410 (-)
AMCG00000719 NA other upstream 1358842 1478740 ~ 1500661 (-)
AMCG00000731 NA other upstream 1642131 1762029 ~ 1771025 (-)

Expression


Co-expression Network