AMCG00000710 (myo1b)


Basic Information

Item Value
gene id AMCG00000710
gene name myo1b
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1307821 ~ 1312408 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000710
TCACATGCAGCCACTCTGTGGGGCGCGCACTCCTGTGCCATCACCACCATCATCTTCCTCACCTCCATCccacttcctcctcctcctcctcttcctcatggAGGCAGGTCCCCCGTGCTCTCTCTTTCGGGGGGTGCGCACCCTGTGTGCCGCGGGACTCACCTcattctcctcttcctccctcccacCCCTGGCCAGGTGCGTCGGGAGTACAGGAAGTTCTTCAGAGCCAATGCCGGCAAGAAGATCTACGAGTTCATCCTGCAGAGAATCATGCAGAAATATTTCCTGGACCTGAAGAAGACGATGCCCTCCATGTCTCCCATCGACAAGAGTTGGCCGGCCAGGCCCTACCTCTTCCTGGAGGACACCCACGAGGAGCTGAGGTACAGGAGCCAGTTCACCGAGCAGAAGAAGGCCATCTTCGAGGAGAAGCTGGAGGCCAGCGAGATGTTCAAGGACAGGAAGACCCTGTACCCCAGCAGTGTCAGCCAGCCATTCAAAGGGGACTATCTGGAAATCAGCAAAAATCCAAAATACCAGAAGCTAGGCAGCCTTGTGGAGGAGAAAATCATCCTGGCAGACACAGTCAACTGGGCCAATGGCAATGCAAGTATCTCTCGGGGTCTCCTGGCCGGCGGGGCTCCCCAGCTTTTCCTGCTCACCAAAAACAGCCTCATCCTGGCCGATCAGAAGTCGGGGCAGATCAAGTCCAACGTACCCCTGGATGACATCAGTAGCGTTTCTGTCAGGTCCCAGAGCGATGGCTTCTTCGCGCTGCATCTCAAAGAGAGCCCCGTCCCAGCGGACACTCCCACAATGCTCGCCGAGAGGCTGGGGTCCACTCTGGGTTCACCCTCGCTTTCCTTTCCCAGCCTGCCGGACGGTGGGAACTCTGGGCAGGCCGTGCAGTAA
>TU157564
GGACTCACCTcattctcctcttcctccctcccacCCCTGGCCAGGTGCGTCGGGAGTACAGGAAGTTCTTCAGAGCCAATGCCGGCAAGAAGATCTACGAGTTCATCCTGCAGAGAATCATGCAGAAATATTTCCTGGACCTGAAGAAGACGATGCCCTCCATGTCTCCCATCGACAAGAGTTGGCCGGCCAGGCCCTACCTCTTCCTGGAGGACACCCACGAGGAGCTGAGGGTCTTCCACCTGTGGAGGTGCAAGTAGTACAGGAGCCAGTTCACCGAGCAGAAGAAGGCCATCTTCGAGGAGAAGCTGGAGGCCAGCGAGATGTTCAAGGACAGGAAGACCCTGTACCCCAGCAGTGTCAGCCAGCCATTCAAAGGGGACTATCTGGAAATCAGCAAAAATCCAAAATACCAGAAGCTAGGCAGCCTTGTGGAGGAGAAAATCATCCTGGCAGACACAGTCAAC

Function

symbol description
myo1b Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; brush border; and microvillus. Is expressed in dorsolateral placode; lens; notochord; rhombomere; and somite. Orthologous to human MYO1B (myosin IB).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000710 True 915 mRNA 0.58 6 1307821 1312408
TU157564 False 467 lncRNA 0.54 4 1310839 1312254

Neighbor

gene id symbol gene type direction distance location
AMCG00000707 NA coding downstream 31817 1270353 ~ 1276004 (-)
AMCG00000706 NA coding downstream 101924 1154310 ~ 1205897 (-)
AMCG00000703 NA coding downstream 159222 1135468 ~ 1148599 (-)
AMCG00000701 NA coding downstream 448010 842271 ~ 859811 (-)
AMCG00000699 NA coding downstream 627338 679014 ~ 680483 (-)
AMCG00000711 NA coding upstream 5640 1318048 ~ 1328817 (-)
AMCG00000709 NA coding upstream 25540 1337948 ~ 1344902 (-)
AMCG00000716 NA coding upstream 136434 1448842 ~ 1450137 (-)
AMCG00000718 NA coding upstream 156289 1468697 ~ 1470445 (-)
AMCG00000720 idh1 coding upstream 194893 1507301 ~ 1510191 (-)
G125685 NA non-coding downstream 468 1269231 ~ 1307353 (-)
G125642 NA non-coding downstream 420345 887154 ~ 887476 (-)
G125625 NA non-coding downstream 709486 597984 ~ 598335 (-)
G125622 NA non-coding downstream 780320 523521 ~ 527501 (-)
G125591 NA non-coding downstream 897004 409615 ~ 410817 (-)
G125712 NA non-coding upstream 7126 1319534 ~ 1319813 (-)
G125719 NA non-coding upstream 11095 1323503 ~ 1328648 (-)
G125845 NA non-coding upstream 262953 1575361 ~ 1577346 (-)
G125875 NA non-coding upstream 509844 1822252 ~ 1827742 (-)
G126005 NA non-coding upstream 1115533 2427941 ~ 2520220 (-)
AMCG00000687 map2 other downstream 1063644 194644 ~ 244177 (-)
G125814 NA other upstream 74435 1386843 ~ 1422410 (-)
AMCG00000719 NA other upstream 166332 1478740 ~ 1500661 (-)
AMCG00000731 NA other upstream 449621 1762029 ~ 1771025 (-)
AMCG00000741 gtf3c3,LOC104966512 other upstream 517136 1829544 ~ 1831310 (-)
G126017 NA other upstream 1139460 2451868 ~ 2457883 (-)

Expression


Co-expression Network