AMCG00000712


Basic Information

Item Value
gene id AMCG00000712
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1413795 ~ 1422116 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000712
ATGGGGCTCAGAGTTGCGCTGACACGGGCCGCTGTGCTGTTCTTCGACTGTGTCCCTGACCGTACCTGCCTGGAGCTGGAGCGGTACCTGCAGACGGAGCCCAAGAAGCTGACGGAGCTGTTTGACGAGGATCTGGACTGCTTGCTGGCCCCCGCCTTCATGAAGGGTGACAGCGACAGCGAGGACACCCAGGACCCCCTGCTGGCCAGCCTGCCCGAGCGGCCCGGCCCCCCGCCGGCGCCGCCGCTGTCTCGGGACAAGCTGCCGTCCACCGCGCCCACCGGCACGCACACCCCCAACTCTGCGTCCTCCAAGGAGGCCGGCGGGGGGGTGAACGCGGCGCAGCTGAGCGCCGTGACCTCGCTGACCCCGCCCTCGTCCCCGGAGCTGGGCCGCCACCTGGTCAAGACCGCGCAGACTCTCACGGCCGCCGTGGACGGCACGCTGACCCTCAAGCTGGTGACCAAGAAAGTGGGGCTGGGGGCGGCCAAGCTGGTTGCCTCGACGGCCCTGGCCTCACCCTCCAAGGGGACGCAGAGCGACGGGGAGCAGGGTGGCGGCGGGGGGGCGGCAGCTCCCgagatctcccctgagaacaaGAAGCGGGTCCATCGCTGCCAGTTCAACGGCTGCAGGAAGGTGTACACCAAGAGCTCCCACCTGAAGGCGCACCAAAGAACTCACACAGGTGAGAAGCCGTACAAGTGCTCGTGGGAAGGGTGCGAGTGGCGCTTCGCCCGCAGCGACGAGTGTTTCTCCCGGTCGGACCACCTGGCTCTGCACATGAAGAGGCACATCTGAGAGGgagccctgccccccccacgCCCAGCAGAGCTTTCAGCGGCCACAGCCACCAACAGCAGGGAGAgcgagggagcgagggagagagaaagagcaaggGAGCAGCGGAGGACAAATTTTTTAAGCGCACATTTTTCTTAAGACTCCTTCATCTTGTAGCAGATATGCGATTAGCCATGCCTTACCAACAAAGCCACGGGATGGGAGTCAGACACTGCCAAACGATTGCTGATCCAGTCAAGcctcataaatatatatatatacatgtgtgtgtgtgtgtatatatatatatatatatatatatgtaattattacatGTTTTCCATGATATACTGTTATCTGAGCTACAGGCGCCCTGGCAGCAGTGAGTCTGCAGTGCGATCTCTCTGGACCCCCCCTGGCCGAAGCTGCTCAGAAATCATTGGACATTTGACTCCCTGTTCCTCCCGCCGTGTCCgttccctcctcctctcccatttgtctgcccccccaccccaaacccAAAGGAGACGCAACACAAGACTACACAAACTCCACTGTGGGGAGACGACAAACAAAGAAACTGATCAAACTGTGGAAACCAAAAGAGAGAAGAGTGGGGCAGGCTGGGACAGGGCGGGGGGGCGCTCCTTGCCTCACTGGGACGCCGGACGCCTCACCGGCCACGACCGCGCAGCGACACTTTCTTGcctttttttactttgtatattttgtttgtttgcgtttgtttttgttttgtaagtctATTCTGAGctgaaatgtcttaaaactCACTGAGACTGTTTGCCTTTGCGGACGATCGCGTGTCGACGGGGATCGGAAGCGAGAGAAAGACGAGAAAAAAGCAGCTGCTATGAGGCGCGGACTACAAAAGGAGGACGACAAACTGAGAACGAGGCACAAGGCTTGGCGCTCTCGGGCCACGGAAGGGAAGGCCTGCGTCCGTTCGTTTGTGAtcgtttctatttatttgtttttgtttgatttcgtTTCGTTGTTCACTCACCTGGAACAACTCCACAGCGTACCTCTCTCCAGGCTTACCTTCTCATCTGCAGCCTACAAAACTTGAACTGCTCTTCGGCATTAAGAGCCTTCCTCGTCTGTGTGGGACCAGCTCTGCCACACcgatcctcctcttcctcagacAGCCAGGAGGGGCGGGGGGACGACAATGACACGCGACTTTGAGGAGACCCCGTCACTCGTCCTCCCGCCCCGCCCACAAAGAAACAACACGCCGACATGTCAACTCCAGACAAACTTGCCTGTCTGTTACCCTGTTGTCTGCactgactttttaaatgttctccgtgttttgttttgtttttcttaaaaaaagaaaatgggaaaaaaaaaaatacacaccaacacacacacaagcacccactgacacacacacacacacaggcattcactgacacacacacacaggcattcaccgacacacacacacagacacacacacactgacacacacacacagccattcactgacacacacacacactgacacaccgacacacacactcacagaccaGACCCACGcaggcacacacgcacacaacacTTTTTCTTTGCTCGCAGCTTTTtgttatgaaaagaaaagaaaaaaatcaaggggaaaaaaacgaaacaagaACAGTTCTGATGGTTCCTGGCGGGCCTGCGCCGCTGCCCGGGACTCGTTGTCTTGCAGCCGATAGCGTCTCTCCGGGGGCGCGAATCATGCCAAATTGTGTGAAGATCTGCGTACCTTATTCCCTCCTGTATTCGCAGTTTGCGGTGGCGTGTGCGAGCTGCGCACGAGTGCCGTGTGACTCACAGGGGGCCGGATGAGGTCTGTGTTTCTGAGCATGCCCAGAAGGCTGCCGAGCCCGGAGGTCCGTCCCCGGGGGGCAGCCGTATCTGGTCGATACGAACAATCAAGTCCGATTATTATTCTCAGCGATGTTTTCCGTTTTCCTCAAGCACTTTGTTTGAGTCTCCCAGCGAAGCTCCGGGATCAGTCCCCAACCAGGCCTGCGAGAGAGTGGCCCCCATCGCCGCGCCGCTCTCCTGCCCCACCGTGCGGCTGAGGCCACGGTTTTGAGGGGTGGGAAGGGAAAAGCAGCCGAGACCCCCGACTGTCACGATTTTATAAGGGAGCTCTGAACAGGGATCTCTGAAGTGACACGTTTGTGAGGCTCCTGACAGCGTCCGGTCCTCCATCTCGTGTCTGGCCAGCTGTGCGTCCCCGACCCCTGGGGCGGCACACCTGACTCCTCCGCTGCATCACGAGCCTTTGCCCCGGGTAATTGTCTTAATTGAGTTTCGGGAAAAGAGGCCAATTAAGCCATTAGCCGTCGATTAAATAATGAAAGTAGTAGCCATGTAGCCATTAGATCAAGGGCCTGCAGTGCGGTGGATTAGGAGAGTGACGGGAGCCAGCCCCAGGGTCCTAGTGTCTACCCTCTCCTTTTTCCTTCTCTCGCCATCATCGTTACCCAGCATGCACGACTGCCCTCCCCCGCCACTGTGACCTGCACTCCGCACCCCCTTTCCAAATTCACTCTTCTGTTCCAGCTGACCTGGTGATTCGATCACCTGGCGCAACACAGACACGCACCCGTACATCAGAGTATAATTGGAGAAAAATCACAGAACACAGACACGTACTGTATTTCAGAGTGTCCGTGGAGAAAAACACGCCAAACcagatgtgtgtctgtgtatctctcTTTGAAATCTCACAACCACGGTATTGCTTGGCTTCCTGCACTCGCCTGAAGAGCAGCAAACAACAATACGGGGatttgttcaaaatatatatgatgcacgtttaaaaaagaaaacaaagatacatttttgCCCGAGTCCAGCCCCTCCATTTCAGAAAGGATTGCCGAGTGGTGGTGAGGAGGTACACTAGACTAAACTAATATCAACTGATCAGATCTCGCTGCGAACGCGCACATCAgtgccccctctccctctctccctccctctctctctctctctctctctctctgtgtgattGTTTAATCCCTCCCTCCCAAAAAAAGACACAGCGGCCATCCCAGTGTGATCGGCTTGCGGAAAGatgcaaaatgcacatttacacTTTTCCAAAGATTGAGCGGTAACGCTGTAAATAAGTGAGCAAAGTGGATAAATCAATCTTTCCCTTCATTCTTGGCCCCCTGAAAACCCCGAGCTGCCCCCCCGCCCGAGCTGCCCCGTGCACTGGACACGGCCCGGGAACGAGGCGCTGCAGGACGGCAACCGAACACGCTGTAGACGTTCAGTCCTCCGTTGACTTTATCAGTACAGTTTGATGTACAGAGTGATGTGGGTTTAGTTTTATAAGGTCCTTATTGCCTGTAACTGCAGGATGTACAtttagcaaaaacaacaaaaacaacaaaaaaatacaaaaacacaaaaaaacactccccctcataaaaaaaaaatacaaaaaacataaaaaacacaaaaaaataaataacgcaGGCTTCAGGTCATCGGTGACTTGTATGAGTTGTGATGAATTAAAAGTGTTCTTCTTAGCCacagcaaaacatttcagtccaTGATCCGCACTCTGTGTTCTGCTAGCCTAGCCTGTCTGTTCGAGCACTCCTCTGTCAAAGTGTCCACTTAACATGTTCTGATGCCCGAGAATGCGGTGCCCACCTCACACAAACCCCCCCGCCGCGGGCGCCTGGGCCAGCCCGGGCCTGAGCTGGACGCTGGGAGGCGCTGGTTCTGACCCCAGCTCTCCGGACCAGGTCCCCAGCCCTCGTGGGTACTGCGCTCTTGGGTCTGTTTAGATCTGCTGTGATTGTCCATACTCCTTGTGTCCTTGTGTTAGACCAGGGGTTCACCATTCCGCTCCTCCTGCCCCAGTTCCgctcccaccaccaccaccaccaccctgaCCCGCGGACCCCCGGACCCCGTGCCCGGGCCCTCGCCACAGTCTGGGAGAATTAATCTCTCGGTCCATGCATTCTGGGAGAGAGAATTtcgcagtgcattctgggagttGAGTGTCTGTGCTGGGCagctctctcttctctccccccatctctctctctccgtctggGCTGAAGGGCCCCGGGGTCTGGAGCTCGGAGACAGAGGGTCCGCCCTCAATCCCTCAGACAGCCCTGAACTGTGTTATTGTGCATTTTCTACAGGCCTTgctatttcattgtttttttggttcTGTTTTGGTTCGGTTCGGTTTGGTTTCCTTTGCCTCGTGTAAGTCCGGAGAGACAGGGCTCGACGCCGCACACGGTTAGTGAGAGTGCCGGGCCGGTACCTGTAAGCGTTCTGCAGACGTCGGTCCTGGAGGTGCCCAAGGAGAACTCTGACCTTGCTCGGGGTCTCCACAAGTGCTTCTCGTTCGCCAGTCGGGGGACTCGGCGGCCGGGTTTCCGGTCCGCTCCTCGGCCCTGTGctctgttttcattattgaagACGCCACGCCTTCACCGAGACCCCCTCCCTGTCACTCACcgcccccccagccccagcactccccagcaccccccacccacc

Function

GO:

id name namespace
GO:0021634 optic nerve formation biological_process

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000712 True 5349 mRNA 0.55 4 1413795 1422116

Neighbor

gene id symbol gene type direction distance location
AMCG00000715 NA coding upstream 17825 1395396 ~ 1395970 (+)
AMCG00000704 NA coding upstream 140830 1256781 ~ 1272965 (+)
AMCG00000708 NA coding upstream 164370 1248741 ~ 1249425 (+)
AMCG00000705 NA coding upstream 179861 1226317 ~ 1233934 (+)
AMCG00000702 vwc2l coding upstream 280610 1111881 ~ 1133185 (+)
AMCG00000713 creb1b,creb1,LOC107663917,LOC107551947 coding downstream 10876 1432992 ~ 1447408 (+)
AMCG00000714 ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902 coding downstream 30496 1452612 ~ 1463637 (+)
AMCG00000717 NA coding downstream 132562 1554678 ~ 1575439 (+)
AMCG00000722 NA coding downstream 168246 1590362 ~ 1594603 (+)
AMCG00000724 dnajb11 coding downstream 191721 1613837 ~ 1621391 (+)
G125713 NA non-coding upstream 85156 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 106460 1304095 ~ 1307335 (+)
G125613 NA non-coding upstream 816660 596787 ~ 597135 (+)
G125612 NA non-coding upstream 838303 575290 ~ 575492 (+)
G125605 erbb4,LOC107555909,LOC107741926,LOC107662043,LOC107721020,LOC107660610 non-coding upstream 881883 529899 ~ 531912 (+)
G125736 NA non-coding downstream 4517 1426633 ~ 1426943 (+)
G125767 NA non-coding downstream 172707 1594823 ~ 1609210 (+)
G125756 NA non-coding downstream 195692 1617808 ~ 1621888 (+)
G125955 NA non-coding downstream 869719 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 1005554 2427670 ~ 2520585 (+)
G125561 NA other upstream 1010204 339640 ~ 403591 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other downstream 177580 1599696 ~ 1606031 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 246729 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 383291 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 4039185 5461301 ~ 5465981 (+)
G127134 NA other downstream 7195083 8617199 ~ 8620195 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000972 klf7a coding NC_007112.7 CM002885.2 6403551 ~ 6494384 (-)