AMCG00000717


Basic Information

Item Value
gene id AMCG00000717
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1554678 ~ 1575439 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000717
ATGTTCTCTGCGAACCGGGacAGTAACTTCGTGCTGGGCAATGCGCAGGTGCAGTCCCTGTACCCCATCGTTTACTGCTCCGATGGCTTCTGCGAACTGTCCGGCTTCGCCAGGGCGGAGCTCATGCAGAGGAGCTGCGCGTGTCACTTCCTGTACGGCACCGAGACCAGCGCCCAGCTGATCGGCGAGATCCAGGTGGCGCTGGATGAGCGGCGCGAGTTCAAGACTGAGGTCGTCTTCTACAAGAAAGGAGGTACTCAGTTCTGGTGTCTGCTGGACATCGTGCCCATTAAGAACGAGAAGGGGGAGGTGGTGCTGTTCCTGGTGTCACACAAAGACATcactgacaacaaaaacaaccaggACCCCGAGCAGGGCCCCGAGACcgATGAGGAGACAGGGCTGCAGGTGCACCGGGTCACCCGGCCCCCCGGCTTCACCACCAGCCGACGCCGCAGCCGAGCTaaCGTGTTTGGGGAGAAGCCACCCATCCCAGAATACAAGGTCGCTGCCATCCAGAAGTCACGCTTCATCCTGCTGCACTACGGGACATTCAAGGCGGGCTGGGATTGGCTGATCCTGCTGGCCACCTTCTACGTGGCAGTGACCGTGCCCTATAACGTGTGCTTCACAGTGGCGGGGGGGCGGGACGAAGGAGGCTCCGCCTCCCGCAGCCCCCCCAGTGTCAGTGACATCCTGGTGGAGATCCTCTTCATGCTGGacATTGTGCTGAACTTCCGCACCACCTACGTCAGTAAGTCGGGGCAGGTGGTCTACGACGCGCGCTCCATCTGTGTGCACTACACCACCACCTGGCTGTTCGTGGACCTCATCGCCGCGCTGCCCTTTGACCTCCTGTATGCCTTCAACGTCAGCGTGAAGCTGGAGCGCTACTCGCAGTACAGCGCCGTGGTGCTCACCCTGCTCATGTCCATGTTCGCCCTGCTGGCGCACTGGATGGCCTGCCTGGGCAAGCGCCTGGGGACACCCTACTTCCCGACCTCCCTCCTCGGGGTTCCCGATTCGACACACATCCCGGCCCTGGGCGGGGCCTCTCAGAACGGCAGCCAATGGAACGCCTCGGGGGCGGAGCTGGCGGGCGGGGACTCCTGGAACGGCAGCAGTCAGTGGAACGTGTCGGcttcggcggcggcggccggggCGGGGCTGGTGGGCCGGGTGCTGTCTCCGGGCCCCGGACCCACGAAGGGGCCGGTGGCGGAGCTGGCAGGGGGGCCCTCGGTGCGCAGCTCCTACGTGACGTCGCTGTACTTCGCTCTCAGCAGCCTGACCAGCGTGGGCTTCGGCAACGTCTCGGCCAACACAGACACCGAGAAGATCTTCTCCATCTGCACCATGCTGGTGGGAGccctgATGCACGCCGTGGTGTTCGGGAACGTGACGGCGATCATCCAGCGCATGTACTCGCGCCGCTCACTGTACCACACGCGCACCAAGGACCTCAAGGACTTCATCCGCGTCCACCGGCTGCCCAAGGCCCTGGAGCAGCGCGTGCTGGAGTGCTTCCAGACCACCTGGTCTGTCAACAACGGCATTGACGTCAACGAGCTGCTGAAGGACTTCCCGGATGAGCTGCGGGCCGACATCGCCATGCACCTGAACAAGGAGCTGCTCCAGCTGCCGCTGTTCGAGTCGGCCAGCCGGGGCTGCCTGCGCTCGCTGTCGCTCATCATCAAGACGTCGTTCTGCGCGCCGGGCGAGTTCCTGATCCGCCAGGGCGACGCGCTGCAGGCCATCTACTTCGTCTGCTCGGGCTCCATGGAGGTGCTGAAGGACAACACCGTCCTCGCCATCCTGGGTGAgagtccgtccGTGATCAAGACCAACGCCAACGTCAAGGCGCTCACCTACTGCGACCTGCAGTACATCAGCCTGAAGGGGCTGCGCGAGGTGCTGCGGCTCTACCCCGAGTACGCGGTGCGCTTCATCTCCGAGATCCAGCACGACCTCACCTACAACCTGCGCGAGGGCAGCGGCCCCGACGTGAGTGGCTCCGCCTCCTCTACCTGTGTCTCTACCTGGCACTCTCCCCTGCCGGCACTCCCACGCTCGCCCCTGCGTCTGTCCCGCGGCCTGAACTCCCCCCTGCGCTCCCCCCTGCTCGCCCCGCGCCCCTTCCGCCCTTCCCCCGACGCCAGCCGCCCCGCCACCCTGCAGATCCCCCTGGTCAGCTTCAGCAGCGCCCCCCCGGAGCTCAGCCCCAGgtttgTTGATGGGATAGAGGCCGAGACCAATGTCTCCTCGGCACAGAGGCCCCCATGCCAGCAGCCTTGGCCCCCACAGGACCCGCCCCCGGGCCCCTCACCGCCCCCTCTCAGACCCACCGCCCTGGTGGAGCTGCAAGAGTGGGGGGCCGGGGGGCAGCACCCCAGCACCGAGCACATCAGCTACATCGACGAGGAGGGGACGCCcctgtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000717 True 2439 mRNA 0.65 14 1554678 1575439

Neighbor

gene id symbol gene type direction distance location
AMCG00000714 ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902 coding upstream 91041 1452612 ~ 1463637 (+)
AMCG00000713 creb1b,creb1,LOC107663917,LOC107551947 coding upstream 107270 1432992 ~ 1447408 (+)
AMCG00000712 NA coding upstream 132562 1413795 ~ 1422116 (+)
AMCG00000715 NA coding upstream 158708 1395396 ~ 1395970 (+)
AMCG00000704 NA coding upstream 281713 1256781 ~ 1272965 (+)
AMCG00000722 NA coding downstream 14923 1590362 ~ 1594603 (+)
AMCG00000724 dnajb11 coding downstream 38398 1613837 ~ 1621391 (+)
AMCG00000725 NA coding downstream 62916 1638355 ~ 1644638 (+)
AMCG00000730 LOC107389566,LOC107095702,LOC101072759,LOC105358294 coding downstream 129355 1704794 ~ 1710396 (+)
AMCG00000738 NA coding downstream 216969 1792408 ~ 1798431 (+)
G125736 NA non-coding upstream 127735 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 226039 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 247343 1304095 ~ 1307335 (+)
G125613 NA non-coding upstream 957543 596787 ~ 597135 (+)
G125612 NA non-coding upstream 979186 575290 ~ 575492 (+)
G125767 NA non-coding downstream 19384 1594823 ~ 1609210 (+)
G125756 NA non-coding downstream 42369 1617808 ~ 1621888 (+)
G125955 NA non-coding downstream 716396 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 852231 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 982553 2557992 ~ 2558257 (+)
G125561 NA other upstream 1151087 339640 ~ 403591 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other downstream 24257 1599696 ~ 1606031 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 93406 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 229968 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 3885862 5461301 ~ 5465981 (+)
G127134 NA other downstream 7041760 8617199 ~ 8620195 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037870 kcnh3 coding NC_007120.7 CM002893.2 27909927 ~ 28103097 (-)