AMCG00000718


Basic Information

Item Value
gene id AMCG00000718
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1468697 ~ 1470445 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000718
ATGGCGCCCCCTGTGTGCGGCGCCCTGCACTGCGCCCTGCTGCTGGCCTGGCTGCCCTCCCTGGGCTGGGCCGCCTCCAAGGCCATCGTGTGCCGGGAGATCACGGTGCCCATGTGCAAGGGCATCGGCTACAACCTGACCTACATGCCCAACCAGTTCAACCACGACACGCAGGACGAGGCGGGGCTGGAGGCGCACCAGTTCTGGCCGCTGGTGGAGATCCAGTGCTCGCCGGATCTGCTGTTTTTCCTGTGCAGCATGTACACGCCCATCTGCCTGCCCGACTACCGCAAGCCGCTGCCGCCCTGCCGCTCGGTGTGCGAGCGCGCCAAGCAGGGCTGCTCCCCCCTCATGAGCCAGTACGGCTTCGAGTGGCCCGAGAGGATGAGCTGCGGCCGGCTGCCCGAGCTGGGCGACCCCGACACCCTGTGCATGGACTACAACCGCAGCGAGAGCACCACGCTGTccccgccgccgccgcccgCGCTGCTGCAGAAGCCCACGCCCCGGGGGCCCCCGCGCCGGCCCGGCAGGCCCCTCCCCGGGAAGCTGGCCCCCCCGTCCTCTGTGGCCTGCGAGCGGGAGTGCCGGTGCCGGGAGCCGCTGGTGCCCATCCGCAAGGAGGCCCACCCGCTGTACAACCGCGTGCGCACCGGGCCGCTGCTCAACTGCGCGCTGCCCTGCTACCTGCCCTACTTCTCCCCGGACGAGCACACCTTCACCAGCTTCTGGATCGGCCTGTGGTCAGTGCTGTGCTTCCTGTCCACCTTCGCCACTGTGGCCACCTTCCTCATCGACATGGAGCGCTTCCAGTACCCTGAGCGGCCCATCATCTTCCTCGCCACCTGCTACCTGTTCGTGTCGCTGGGCTACATCGTGCGGCTGGTGGCCGGGCACCCGAGCGTGGCCTGCAGCCACGACCAGCAGCACGTGCACTACGACACCACCGGCCCGGCCCTGTGCACGCTGGTCTTCCTGCTCGTCTACTTCTTTGGCATGGCCAGCTCCATCTGGTGGGTCATCCTGTCCTTCACCTGGTTCCTGGCGGCGGGCATGAAGTGGGGTAACGAGGCGATCGCAGGCTACTCACAGTACTTCCACATGGCGGCCTGGCTGGTGCCCAGCGTCAAGTCGGTGGCCGTGCTGGCACTCAGCTCCGTGGACGGTGACCCGGTTGCCGGCATCTGCTACGTGGGCAACCAGAGCCTGGACAGCCTGCGGGGCTTTGTGCTGGCGCCGCTGGTGCTCTACCTGCTGACCGGCTCGCTGTTCCTGCTGGCCGGCTTCGTGTCTCTGTTCCGCATCCGCAGTGTCATCAAGCAGGGCGGCACCAAGACGGACAAGCTGGAGAAGCTGATGATCCGCATCGGCATCTTCACCGTGCTGTACACCGTGCCCGCCGCCGCCGTGGTGGCCTGCTACGTGTACGAGCAGCACTACCGGGAGCGCTGGGAGCGGGCGCTGGGCTGCTCCTGCCCGGCCGACAGGCAGGGGGCCGCCGGGGGGCCGGACTACGCCGTGTTCATGCTCAAGTACTTCATGTGCCTGGTGGTGGGCATCACCTCGGGCGTGTGGGTCTGGTCCGGGAAGACGCTGGAGTCCTGGCGCCGCTTCCTGGGCCGCTGCTGCCGGACCCGCAAGCCCACCAGCGCCTCCATGTACAGCGAGGCCAGCACCGCGCTCACCGCCCGCACCGGCCTGGCCAGCTCCGGCTCCTACCACAAGCCTGTGCCGCTGTCCCAGGTGTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0021531 spinal cord radial glial cell differentiation biological_process
GO:0048794 swim bladder development biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0001889 liver development biological_process
GO:0007409 axonogenesis biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02375 FZD5_8, fz2; frizzled 5/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000718 True 1749 mRNA 0.69 1 1468697 1470445

Neighbor

gene id symbol gene type direction distance location
AMCG00000716 NA coding downstream 18560 1448842 ~ 1450137 (-)
AMCG00000709 NA coding downstream 123795 1337948 ~ 1344902 (-)
AMCG00000711 NA coding downstream 139880 1318048 ~ 1328817 (-)
AMCG00000707 NA coding downstream 192693 1270353 ~ 1276004 (-)
AMCG00000706 NA coding downstream 262800 1154310 ~ 1205897 (-)
AMCG00000720 idh1 coding upstream 36856 1507301 ~ 1510191 (-)
AMCG00000721 NA coding upstream 40011 1510456 ~ 1511147 (-)
AMCG00000728 NA coding upstream 108354 1578799 ~ 1589393 (-)
AMCG00000727 rab5b,LOC108266395,LOC108430508,LOC107551955,LOC107738511,LOC100697826,LOC107598172,LOC107698530 coding upstream 124372 1594817 ~ 1599675 (-)
AMCG00000726 NA coding upstream 138638 1609083 ~ 1611379 (-)
G125719 NA non-coding downstream 140049 1323503 ~ 1328648 (-)
G125712 NA non-coding downstream 148884 1319534 ~ 1319813 (-)
G125685 NA non-coding downstream 161344 1269231 ~ 1307353 (-)
G125642 NA non-coding downstream 581221 887154 ~ 887476 (-)
G125625 NA non-coding downstream 870362 597984 ~ 598335 (-)
G125845 NA non-coding upstream 104916 1575361 ~ 1577346 (-)
G125875 NA non-coding upstream 351807 1822252 ~ 1827742 (-)
G126005 NA non-coding upstream 957496 2427941 ~ 2520220 (-)
G126020 NA non-coding upstream 990270 2460715 ~ 2462488 (-)
G126037 NA non-coding upstream 1087546 2557991 ~ 2558249 (-)
G125814 NA other downstream 46287 1386843 ~ 1422410 (-)
AMCG00000710 myo1b other downstream 156289 1307821 ~ 1312408 (-)
AMCG00000687 map2 other downstream 1224520 194644 ~ 244177 (-)
AMCG00000719 NA other upstream 8295 1478740 ~ 1500661 (-)
AMCG00000731 NA other upstream 291584 1762029 ~ 1771025 (-)
AMCG00000741 gtf3c3,LOC104966512 other upstream 359099 1829544 ~ 1831310 (-)
G126017 NA other upstream 981423 2451868 ~ 2457883 (-)
G126089 NA other upstream 1566486 3036931 ~ 3041964 (-)

Expression


Co-expression Network