Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00000721 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030137.1 |
| NCBI id | CM030137.1 |
| chromosome length | 27060302 |
| location | 1510456 ~ 1511147 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006099 | tricarboxylic acid cycle | biological_process |
| GO:0006102 | isocitrate metabolic process | biological_process |
| GO:0051287 | NAD binding | molecular_function |
| GO:0004450 | isocitrate dehydrogenase (NADP+) activity | molecular_function |
| GO:0000287 | magnesium ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00000721 | True | 315 | mRNA | 0.61 | 3 | 1510456 | 1511147 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00000720 | idh1 | coding | downstream | 265 | 1507301 ~ 1510191 (-) |
| AMCG00000718 | NA | coding | downstream | 40011 | 1468697 ~ 1470445 (-) |
| AMCG00000716 | NA | coding | downstream | 60319 | 1448842 ~ 1450137 (-) |
| AMCG00000709 | NA | coding | downstream | 165554 | 1337948 ~ 1344902 (-) |
| AMCG00000711 | NA | coding | downstream | 181639 | 1318048 ~ 1328817 (-) |
| AMCG00000728 | NA | coding | upstream | 67652 | 1578799 ~ 1589393 (-) |
| AMCG00000727 | rab5b,LOC108266395,LOC108430508,LOC107551955,LOC107738511,LOC100697826,LOC107598172,LOC107698530 | coding | upstream | 83670 | 1594817 ~ 1599675 (-) |
| AMCG00000726 | NA | coding | upstream | 97936 | 1609083 ~ 1611379 (-) |
| AMCG00000732 | satb2 | coding | upstream | 187066 | 1698213 ~ 1704869 (-) |
| AMCG00000742 | NA | coding | upstream | 306316 | 1817463 ~ 1822204 (-) |
| G125719 | NA | non-coding | downstream | 181808 | 1323503 ~ 1328648 (-) |
| G125712 | NA | non-coding | downstream | 190643 | 1319534 ~ 1319813 (-) |
| G125685 | NA | non-coding | downstream | 203103 | 1269231 ~ 1307353 (-) |
| G125642 | NA | non-coding | downstream | 622980 | 887154 ~ 887476 (-) |
| G125625 | NA | non-coding | downstream | 912121 | 597984 ~ 598335 (-) |
| G125845 | NA | non-coding | upstream | 64214 | 1575361 ~ 1577346 (-) |
| G125875 | NA | non-coding | upstream | 311105 | 1822252 ~ 1827742 (-) |
| G126005 | NA | non-coding | upstream | 916794 | 2427941 ~ 2520220 (-) |
| G126020 | NA | non-coding | upstream | 949568 | 2460715 ~ 2462488 (-) |
| G126037 | NA | non-coding | upstream | 1046844 | 2557991 ~ 2558249 (-) |
| AMCG00000719 | NA | other | downstream | 9795 | 1478740 ~ 1500661 (-) |
| G125814 | NA | other | downstream | 88046 | 1386843 ~ 1422410 (-) |
| AMCG00000710 | myo1b | other | downstream | 198048 | 1307821 ~ 1312408 (-) |
| AMCG00000687 | map2 | other | downstream | 1266279 | 194644 ~ 244177 (-) |
| AMCG00000731 | NA | other | upstream | 250882 | 1762029 ~ 1771025 (-) |
| AMCG00000741 | gtf3c3,LOC104966512 | other | upstream | 318397 | 1829544 ~ 1831310 (-) |
| G126017 | NA | other | upstream | 940721 | 2451868 ~ 2457883 (-) |
| G126089 | NA | other | upstream | 1525784 | 3036931 ~ 3041964 (-) |
| AMCG00000771 | nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 | other | upstream | 1533020 | 3044167 ~ 3050016 (-) |
