AMCG00000724 (dnajb11)


Basic Information

Item Value
gene id AMCG00000724
gene name dnajb11
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1613837 ~ 1621391 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000724
ATGGCTTCCAGGAGGCTGAGTCTGAACAGCGCTTGCTGCCTGCTGCTGTACTTCGTGGCGGCGGTGCTGGCGGGGCGCGACTTCTACAAGATCCTGGGCGTGTCCAAGTCGGCCTCCATCAAGGACATAAAGAAGGCCTACAGGAAGCTGGCGCTGCAGCTGCACCCCGACCGGAATCCGGACGACCCCCAGGCCCAGGACAAATTCCAAGACCTGGGCGCGGCATACGAGGTGCTGTCAGACGAGGAAAAGAGAAAGCAGTACGATGCCTATGGGGAGGAGGGGCTGAAGGAGGGACACCACAGCTCCCACGGGGACATCTTCTCCAGtttCTTTGGGGACTTCGGGTTCATGTTTGGTGGCAACCCGCGGCAACAAGACAGGAACATCCCACGGGGGAACGACATTGTGTTAGACCTGGAAGTCACGCTCGAAGAGGTGTATTCTGGGAACTTTGTGGAGgTGGTGCGAAATAAGCCTGTGGCGAAGGAGGCCCCTGGCAAGAGGAAGTGTAACTGCCGGCAGGAAATGAGGACCACACAGCTGGGGCCGGGCCGCTTCCAGATGACACAGGAAGTGGTTTGTGATGAGTGTCCCAATGTCAAGCTGGTGAATGAGGAGCGGACTCTGGAGGTGGAGATCGAGCAGGGGGTGAGGGACGACATGGAGTACCCCTTCATCGGGGAGGgcgAGCCGCACATTGACGGGGAGCCCGGAGACCTGCGCTTCCGCATCAAAGTCATGAAgcatcCTGTGTTTGAGCGCCGGGGCGATGACCTGTACACTAATGTCACCATCTCCCTGGCGGAGGCACTGGTGGGCTTCGAGATGGACATCACGCATCTGGACGGGCACAAGCGGCCGGGCGGGGCACGGGAGCGGGGCAGGAATCGCGGGGCTACAGACGTGCCCCACCCCTTGAACCCGCCTACCCGCAGAACGTCAGGCCGAACACGTTTTGTAGCAGAGACCCCCCTCAGACCTATCAGTCACCAGGGCGTCCTGCTGGCTGCCTCATGA

Function

symbol description
dnajb11 Predicted to enable unfolded protein binding activity. Predicted to act upstream of or within protein folding. Is expressed in several structures, including axial mesoderm; blood vessel; nervous system; neural tube; and pectoral fin. Human ortholog(s) of this gene implicated in polycystic kidney disease. Orthologous to human DNAJB11 (DnaJ heat shock protein family (Hsp40) member B11).

NR:

description
dnaJ homolog subfamily B member 11

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09517 DNAJB11; DnaJ homolog subfamily B member 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000724 True 1020 mRNA 0.61 10 1613837 1621391

Neighbor

gene id symbol gene type direction distance location
AMCG00000722 NA coding upstream 19234 1590362 ~ 1594603 (+)
AMCG00000717 NA coding upstream 38398 1554678 ~ 1575439 (+)
AMCG00000714 ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902 coding upstream 150200 1452612 ~ 1463637 (+)
AMCG00000713 creb1b,creb1,LOC107663917,LOC107551947 coding upstream 166429 1432992 ~ 1447408 (+)
AMCG00000712 NA coding upstream 191721 1413795 ~ 1422116 (+)
AMCG00000725 NA coding downstream 16964 1638355 ~ 1644638 (+)
AMCG00000730 LOC107389566,LOC107095702,LOC101072759,LOC105358294 coding downstream 83403 1704794 ~ 1710396 (+)
AMCG00000738 NA coding downstream 171017 1792408 ~ 1798431 (+)
AMCG00000737 NA coding downstream 203478 1824869 ~ 1830750 (+)
AMCG00000736 NA coding downstream 248188 1869579 ~ 1873692 (+)
G125767 NA non-coding upstream 4627 1594823 ~ 1609210 (+)
G125736 NA non-coding upstream 186894 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 285198 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 306502 1304095 ~ 1307335 (+)
G125613 NA non-coding upstream 1016702 596787 ~ 597135 (+)
G125955 NA non-coding downstream 670444 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 806279 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 936601 2557992 ~ 2558257 (+)
G126044 NA non-coding downstream 1144864 2766255 ~ 2766539 (+)
G126050 NA non-coding downstream 1249525 2870916 ~ 2885184 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 7806 1599696 ~ 1606031 (+)
G125561 NA other upstream 1210246 339640 ~ 403591 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 47454 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 184016 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 3839910 5461301 ~ 5465981 (+)
G127134 NA other downstream 6995808 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 8478892 10100283 ~ 10154187 (+)

Expression


Co-expression Network