AMCG00000731


Basic Information

Item Value
gene id AMCG00000731
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1762029 ~ 1771025 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000731
ATGTGCCGAGGGAGGGACAGTGTGCCGAGGGAGgaccCCTCAGCCCAGAAGGCGGTGGGGGGCCGCAAGAAGACCGTATCGTTCAGCAGCCTGGCCTCAGAGAAGAAGGTGAGCAGCGCGGCCGACTGCCTGGCCTTCATGCAGGGCGGCTGTGAGCTGAAGAAGGTGCGGCCCGGGGCGCGCGTCTACAGCCGCTTCTACACCCTGGACCCGGAGCTGGGCTGCCTGCGCTGGGAGCCATCCAAGAAGGACCCGGAGAAGGCCCGGCTGGAGGTGGGCAGCATCCGCGAGGTCCGCACGGGCAAGAGCACCGACACCTTCCGGCACCACGGCCAGGCGGACGCGCTGACGGAGGAGGCGGCCTTCTCGCTCATCCACGGCGAGGACTACCAGTCGCTGGACCTGGTGGCGCTGTCCCCCGACGTGGCCAACATCTGGGTCACCGGGCTGCGCTACCTGCTGGCCCACCCGGGGCTGGTGGGCGGGGGCGGCGCAGGGGGAGGCTGCTTTGGGGGCGGTGTCGGCTGTGCCGGCAGGGGGGCAGATGGCCGCGAGGAGAGCCCTGGCAGCGCGCAGAGAGCCGCCTGGCTGGCTGCCGAGTTCCGGGCGGTGGACGAGTATGGGTACGGCCACGTGCCTGAGGACATTGCTGTGGCTACCGTGTGCTGTCTCTGCCCCGGGGTCAGGGAGGCCAAGGTGCGTCTGCGCTTCAAGGAGATGCAGCGCAGTAAGGAGAAGCTGACGTCCCGCGTGACGCTGGAGGAGTTCCAGGAGGCGTTCTGTGAGCTCTGCACGCCACCGCACGTCTACTTCCTGCTGGCGCAGCTGTCCAAGGAGCGCGAGGTTCTGAGCGCGCAGGACCTGCGCCTCTTCCTGGAGACGGAGCAGGGCCAGGCGGGCCTCACGGCTGAGGCCTGCCTGGACATCATCCGCCGCTTCGAGCCGTCCGCCCCAGGCAGGGACGCCGGGCTGCTGGGCGTGGACGGCTTTGCGCGCTACCTGCTGTCGCCCGAGTGCCACGTGTTCGACCCCGAGCACCGGCGCGTGTGCCAGGACATGAGCCAGCCGCTGCAGCACTACTACATCAGCGCCTCGCACCGCAGCTACCTGCTGGAGGACCAGGTGCGTGGCGCGGTGGACCTCGGCGGCCTGGTGCGAGCGCTGAGGCTGGGCTGCCGCTGCCTGGAGCTGAGCGCCAGCGACGGCCCGGAGGGGGAGCCCGTGCTGGGGGGCCGGCACGAGCAGGGCAGGGGGGGCTCCCACTCGTCTCCGGGCCGCGACCCGGGCTCCCCCCCGGCCCCAGCACCCCCCGTGGCCCTGCGGAGCGCGCTGGAGGTCATCAACAAGTACGCCTTCCTGGCCTCGCCCTTCCCCCTGCTGCTGTACCTGTGCCAGCGCTGCTCGCCCCCCCAGCAGCGCACACTCACCCAGCACCTGCGCCGCGTGTTTGGGGCACGGCTCTTCACGCCGGCGGAGTCGGGAGGCGCGGGGGGTGCTCTGCCCTCTCCGGAGCAGCTGCGCGGGCGGGTGCTGCTGGTGGGGAAGCGGCTGCCGCCGGACGACCCCAGCTCCGAGGGCGAGGTGTCGGATGAGGACGAGgagggcgggggtggggggatgctGGCGGGCCGGCGCCTCACGCTGCAGGGCGAGGAGGAGCTGGGCATGGTGCTGGTGGTGCCGCCCCCTCCCGCGCCACAGCCCCTGCGTCTGCGCCAGGAGCTGTCCGCCCTGGTGGCCATCGAGCGCCAGGGCAGCCGCAGCTACTATCGGCAGTGCCGGCCCGGCTCCCCCGGCGTGGCACCCCCGGACCGGTGGGCGCTGTGCTCGCTGGGGGAGGGCGAGGCGGGCCGGCTGGCCAGCGAGGCGCCGGGGGAGCTGGTGGGCTTCACTAAGCGGCAGCTGACGCGTGTGCGGCCAGGCCCGGTGCGGCTGGACTCCAGCAACCCCAACCCGCAGGACTACTGGCGCTGCGGCTGCCAGCTGGTGGCCATGAACCTGCAGTCGCCCGGCGCTATGATGGACTTGCAGGCGGCCCGCTTCGCCCAGAACGGCGGCTGCGGCTTCGTGCTGCGCCCTGCCTTGCTGCGCGACGAGGTGTCCTACTTCAGCGCCAACTCCCAGGGCTGCGTGCCTGGCGTGCCGCCCCACACGCTGCGGGTCCGGGTCATCAGCGGCCACAGCTTCCCTAAGCCGCCGGGTGGCGGCGCCAAGGGTGAGGTCATTGACCCCTACGTGGTGCTGGAGCTGCACGGCGTCCCGGCTGACTGCTTGGAGCAGCGGACACGGACCATCCCCCATGAGGACTGCCCCCTCATTGACGAGACCTTCGAGTTCCAGGTGAACCTGCCCGAGCTCGCCCTGCTGCGCTTCCTTGTTCTGGACGACGAGCACATTGGTGACGACTTCATCGGCCAGTACAGCGTGGCGGTGGAGTGCCTGCAGCCCGGCTACCGCTGTGTGCCGCTGCTGTCCGCCGCCGGCGAGCCGCTGCCCCACGCCGCCCTGCTGGTGCACGTGGCGCTGAGCACGCAGGGCGGGGGGGGACGGGCGTCGCGCCGGGGGCTGTCCGTGCGCCGGGTACGCCGGGGCCGAGAGTTCGTCACGCTGCGCCACACCGGCCTCCGGCCCCTGGACGACGCCTTCCGCCCTGCTGGGGCCCCACTGAGGGAGGCCGCCGACCTTCGCGACAACACACAGGTCAGAGGGGCCCTGGTGCTGAGGGAGGGGTACCCGTGCCTGGAGCCGGGGGCCGGCCTGTCCGACTCCACACGCAAACTGCTCACCGCTTATAACACGGTGATTGCGGAGCACAAGCAGCTGATCGAGAACGCAGACGCAGTGCAGGAGAGGATCGCACAGGTGCAGAGAGACGggatGGTGTTTCATGAGCAGCTGCAGAGCCTGGGCGAGAAGGAGGGGCTGAAGGGACACAAGCTGAGCAAAGCTGTGGAGAGCTTCGCCTGGAACATCACCGTCctgaaggGTCAGTGTGATCTGCTGCACAGTGCGAAGACCGAGGCTCTGGACTCCCTTCGGCAGCTGACTCTGGCCTTCCAGGCGTGCGGCCTGGGCCCTCCTCCCGAGCCAGCGCCCCCCGGCCAGCACAACAGCCAGCAGGGcgacccccaccccacccagcACAGCGTGCCACACTCCGCCCCCTACTCCACCCTCCACGCCGCCCAGCGCCCGGGCTGGAGCGGCCCGCAGGGGAACGGGCGCGTCTGAGCAGCGCTGAGGCCTGCAGAGAGGACAcacgctgagagagagaggaggagaaaacaGAGTTGGAGCGTTGGAGGgcaagagagaagagagggagggagagagaaggagagaaggcCGGGGGAACTGGGGCAGAGGAGACGAGCAGGAGAGGAGTGCGTTAGTGACAGTAGGGTGAGAAACAGAGAGCAGAGCAGTCCCCTATGCAGTCCTCTCCCAGCGCACTGACGCCCTGTGTGTCAACCCAGTGTGTTAAAGGCAGCACAGTTGAGTCATACAGGACAGGGAGGTCTGTGCAGTAAAATCTGTTATTTCACTGTAACGCAGTGCAGTGTGGACCGGTggacagtgtagtacagtgcagtacaatgttgtaaagaaacaatacagtatagtatagtacagtgtggTATGCAGTCCAGTGGTTCcgtccagtccagtccactctGATCGTCCCCCTCAGTTCGGTACAGTATAGGACAGGACAGTAGTAGTAGGAGGGGACAGTCACACAGCCCTGGCTGCAGGGTGGGTCCCCCGGCACTTCCACTGTACCCCAGTCAGACTGGTACAGACGGGTACCAATCGGCGCAGACTGGGGTGTGAAGCAGTGATGGCAGGACCGGGGCTGTGTGCTGTGGGACGCCGACACCGAGGGGGACGGGAGCGTCACAGCTGCACTGCGCTCGTCACCTGGACAGGCCCCCCCGACCCCGAGAGCAAGGGCTGCTGGGAGAACTCAGATCTGCAGGCGACGGGGGTCCAGGCTCCTGATCGGAGGACTAGAACATTTCCTCAGCTGTAATAACCTCAGAAACGCTGGCTCTCGGCTCCGGTGCTGTCCTGCAGGGGGCGCTGCAGTGGAGCCCGTTGTGTCCACTCACTGCTGCCCTGCTACTGGAGGCGCccacgcgtgtgtgtgtgtgctgctctgGAGTAGTGCAGTTCTGCTCTAGAAAGACATGGGCGCGACACGTGTTGAGCCTGAAACGATACAAAATGAaaggataagggcgtctgccaagaaataaaaataatcatattaataataataaaagagagaagagaaagcaCACCCTGCTGCCCCCAGCGTCCGTGTGTGAGGGGAGACAGCCCCGACACAGCCCAGCGCCCTGCAAACACGGAgcgagagacagggagagagagatgcaatGTATTCCTTCTCTGAGCTTCAGAGAATTTAAAACCCCCTGCAGCGGCGGGCGGTGTTTTGGCGCAGCGGGGGGGTAGCAGGGCGCTCAGAGGGGCGGCTGGGATGGCGATTCAGATCTGAGCTGGTGCTGTGAGTGCACAGtgagacacactctctctctctctctcccgctgcCACAGTGCGCTGGTCCCGTTGGCTCCCACTCCATCCAGGGGGTCCCCAAGAAACAGTCCATGGGGTCCCGTAGAGTCTAAGAGGCCCATTCAACATGGTCTCAGTGAGCAGCCACAATCTCCTGCTGCGACTGTTTGTGTCACATCAAGCTGCAGCTCTGTGGTACTGAGGAgatgatattatatataattataagtgttacatatatgtgtgtattatatatatatatatattttttttttttgggggggtggggcagtTTTTACAGATTTTCTGAAAGAGTCTAAAAAGTATAAAGTGCAAATGTAGCAGGAAAGAACGCAGAAAGGGgggaacaatatatataatattggaTATTTATCGGTACATCCAAACACGtatacagtattaatatttTGCCGTGGGGGGGTTCAGGAGGCAGTGTGCGACTCCGCTATAGAAGCACAGACACCCAGGGAGGTAACGATTCGATGTGCACTTTTaaccaaaaacattattattataactatgtTTACCTTGTATAATTATAGTCTTAACCATCAATATCCTCTTCTGTTGTGTTCCGTTATTAATTACTGGCCTTCAGTGGTCCTGCTGTACTcggctctgtctgtctgtgttttatctGTCATGTTGTCTCTgtaaaccttttaaaaagtatttattgaagaaaacaaacaggacGTGCGCTGGTTTTGTTCTGGGGCGCGGGGTTGTGTTCTGTGTGACGGGCTCTTGACTAAACAGACTCATCCTTCTGCTGCCGCGACTCCGGCCTCTCATTTCCTCCCACACCTTTCACTCGttcatctctctctgtccctctctgggACGGGTCACTCCAGGTCGAGTCCCGCTGTGACCTCTTGTTTTCCACTCCTCCGCAGATCATCCTAATGACTAAAATAAGGAGATTAATTGAATCTTTAAGAGCAGTG
>TU157772
tgtctgtgtgcgtgtgcgtgtgtgtgtgtgattgtctgtgtgtgtgactgtgtatctgtatgtgCGCAGAGTGCCTCAGTGTCTTTCAAGGAGCTGTGTGGGCTCCCCCCGGTGGCCAGCCTGAAGCAGTGCATCCAGAGTCTGGCCCCGCGGCTGCAGTCCCCTGAGGGCCCATCCTGCGCCAGCCTGGTGCTGAGGGAGGGGTACCCGTGCCTGGAGCCGGGGGCCGGCCTGTCCGACTCCACACGCAAACTGCTCACCGCTTATAACACGGTGATTGCGGAGCACAAGCAGCTGATCGAGAACGCAGACGCAGTGCAGGAGAGGATCGCACAGGTGCAGAGAGACGggatGGTGTTTCATGAGCAGCTGCAGAGCCTGGGCGAGAAGGAGGGGCTGAAGGGACACAAGCTGAGCAAAGCTGTGGAGAGCTTCGCCTGGAACATCACCGTCctgaaggGTCAGTGTGATCTGCTGCACAGTGCGAAGACCGAGGCTCTGGACTCCCTTCGGCAGCTGACTCTGGCCTTCCAGGCGTGCGGCCTGGGCCCTCCTCCCGAGCCAGCGCCCCCCGGCCAGCACAACAGCCAGCAGGGcgacccccaccccacccagcACAGCGTGCCACACTCCGCCCCCTACTCCACCCTCCACGCCGCCCAGCGCCCGGGCTGGAGCGGCCCGCAGGGGAACGGGCGCGTCTGAGCAGCGCTGAGGCCTGCAGAGAGGACAcacgctgagagagagaggaggagaaaacaGAGTTGGAGCGTTGGAGGgcaagagagaagagagggagggagagagaaggagagaaggcCGGGGGAACTGGGGCAGAGGAGACGAGCAGGAGAGGAGTGCGTTAGTGACAGTAGGGTGAGAAACAGAGAGCAGAGCAGTCCCCTATGCAGTCCTCTCCCAGCGCACTGACGCCCTGTGTGTCAACCCAGTGTGTTAAAGGCAGCACAGTTGAGTCATACAGGACAGGGAGGTCTGTGCAGTAAAATCTGTTATTTCACTGTAACGCAGTGCAGTGTGGACCGGTggacagtgtagtacagtgcagtacaatgttgtaaagaaacaatacagtatagtatagtacagtgtggTATGCAGTCCAGTGGTTCcgtccagtccagtccactctGATCGTCCCCCTCAGTTCGGTACAGTATAGGACAGGACAGTAGTAGTAGGAGGGGACAGTCACACAGCCCTGGCTGCAGGGTGGGTCCCCCGGCACTTCCACTGTACCCCAGTCAGACTGGTACAGACGGGTACCAATCGGCGCAGACTGGGGTGTGAAGCAGTGATGGCAGGACCGGGGCTGTGTGCTGTGGGACGCCGACACCGAGGGGGACGGGAGCGTCACAGCTGCACTGCGCTCGTCACCTGGACAGGCCCCCCCGACCCCGAGAGCAAGGGCTGCTGGGAGAACTCAGATCTGCAGGCGACGGGGGTCCAGGCTCCTGATCGGAGGACTAGAACATTTCCTCAGCTGTAATAACCTCAGAAACGCTGGCTCTCGGCTCCGGTGCTGTCCTGCAGGGGGCGCTGCAGTGGAGCCCGTTGTGTCCACTCACTGCTGCCCTGCTACTGGAGGCGCccacgcgtgtgtgtgtgtgctgctctgGAGTAGTGCAGTTCTGCTCTAGAAAGACATGGGCGCGACACGTGTTGAGCCTGAAACGATACAAAATGAaaggataagggcgtctgccaagaaataaaaataatcatattaataataataaaagagagaagagaaagcaCACCCTGCTGCCCCCAGCGTCCGTGTGTGAGGGGAGACAGCCCCGACACAGCCCAGCGCCCTGCAAACACGGAgcgagagacagggagagagagatgcaatGTATTCCTTCTCTGAGCTTCAGAGAATTTAAAACCCCCTGCAGCGGCGGGCGGTGTTTTGGCGCAGCGGGGGGGTAGCAGGGCGCTCAGAGGGGCGGCTGGGATGGCGATTCAGATCTGAGCTGGTGCTGTGAGTGCACAGtgagacacactctctctctctctctcccgctgcCACAGTGCGCTGGTCCCGTTGGCTCCCACTCCATCCAGGGGGTCCCCAAGAAACAGTCCATGGGGTCCCGTAGAGTCTAAGAGGCCCATTCAACATGGTCTCAGTGAGCAGCCACAATCTCCTGCTGCGACTGTTTGTGTCACATCAAGCTGCAGCTCTGTGGTACTGAGGAgatgatattatatataattataagtgttacatatatgtgtgtattatatatatatatatattttttttttttgggggggtggggcagtTTTTACAGATTTTCTGAAAGAGTCTAAAAAGTATAAAGTGCAAATGTAGCAGGAAAGAACGCAGAAAGGGgggaacaatatatataatattggaTATTTATCGGTACATCCAAACACGtatacagtattaatatttTGCCGTGGGGGGGTTCAGGAGGCAGTGTGCGACTCCGCTATAGAAGCACAGACACCCAGGGAGGTAACGATTCGATGTGCACTTTTaaccaaaaacattattattataactatgtTTACCTTGTATAATTATAGTCTTAACCATCAATATCCTCTTCTGTTGTGTTCCGTTATTAATTACTGGCCTTCAGTGGTCCTGCTGTACTcggctctgtctgtctgtgttttatctGTCATGTTGTCTCTgtaaaccttttaaaaagtatttattgaagaaaacaaacaggacGTGCGCTGGTTTTGTTCTGGG

Function

GO: NA

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000731 True 5514 mRNA 0.63 8 1762029 1771025
TU157772 False 2755 TUCP 0.55 4 1762262 1767476

Neighbor

gene id symbol gene type direction distance location
AMCG00000732 satb2 coding downstream 57160 1698213 ~ 1704869 (-)
AMCG00000726 NA coding downstream 150650 1609083 ~ 1611379 (-)
AMCG00000727 rab5b,LOC108266395,LOC108430508,LOC107551955,LOC107738511,LOC100697826,LOC107598172,LOC107698530 coding downstream 162354 1594817 ~ 1599675 (-)
AMCG00000728 NA coding downstream 172636 1578799 ~ 1589393 (-)
AMCG00000721 NA coding downstream 250882 1510456 ~ 1511147 (-)
AMCG00000742 NA coding upstream 46438 1817463 ~ 1822204 (-)
AMCG00000744 NA coding upstream 70623 1841648 ~ 1843356 (-)
AMCG00000743 NA coding upstream 72622 1843647 ~ 1843889 (-)
AMCG00000740 NA coding upstream 75284 1846309 ~ 1863624 (-)
AMCG00000739 NA coding upstream 95397 1866422 ~ 1869208 (-)
G125845 NA non-coding downstream 184683 1575361 ~ 1577346 (-)
G125719 NA non-coding downstream 433381 1323503 ~ 1328648 (-)
G125712 NA non-coding downstream 442216 1319534 ~ 1319813 (-)
G125685 NA non-coding downstream 454676 1269231 ~ 1307353 (-)
G125642 NA non-coding downstream 874553 887154 ~ 887476 (-)
G125875 NA non-coding upstream 51227 1822252 ~ 1827742 (-)
G126005 NA non-coding upstream 656916 2427941 ~ 2520220 (-)
G126020 NA non-coding upstream 689690 2460715 ~ 2462488 (-)
G126037 NA non-coding upstream 786966 2557991 ~ 2558249 (-)
G126275 NA non-coding upstream 1779815 3550840 ~ 3552977 (-)
AMCG00000719 NA other downstream 261368 1478740 ~ 1500661 (-)
G125814 NA other downstream 339619 1386843 ~ 1422410 (-)
AMCG00000710 myo1b other downstream 449621 1307821 ~ 1312408 (-)
AMCG00000687 map2 other downstream 1517852 194644 ~ 244177 (-)
AMCG00000741 gtf3c3,LOC104966512 other upstream 58519 1829544 ~ 1831310 (-)
G126017 NA other upstream 680843 2451868 ~ 2457883 (-)
G126089 NA other upstream 1265906 3036931 ~ 3041964 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other upstream 1273142 3044167 ~ 3050016 (-)
G126096 NA other upstream 1360689 3131714 ~ 3149252 (-)

Expression


Co-expression Network