AMCG00000936 (kcnj3,LOC107671326,LOC107566749,LOC107567067,LOC107657376)


Basic Information

Item Value
gene id AMCG00000936
gene name kcnj3,LOC107671326,LOC107566749,LOC107567067,LOC107657376
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9616316 ~ 9616900 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000936
ATGACTTGCCAGGCACGGACATCTTACACAGAGGATGAAGTGCTTTGGGGTCATCGTTTCTTCCCCGTCATTTCTCTCGAAGAGGGTTTCTTTAAAGTCGACTACTCCCAGTTCCACGCCACGTTTGAAGTTCCAACCCCTCCTTACAGTGTGAAAGAACAAGAGGAAATGcttctcctctcttctcctttGATGGCACCTTCTCTGAGCAACAGTGGGGGGGAGAAGAACAACTCTGTGGATGGGTTGGAAACACTCGAGGACACAAGTACCAAAATCCCATCCAAACTGCAAAAGATGACGGGAAGGGAGGACTTTCCCAGGAAGTTGCTGAGGATGAGTTCCACCACCTCTGAGAAAGCCTACAGCCTGGGGGACTTGCCCATGAAACTGCAGCGCATAAGCTCGGTCCCTGGGAACTCGGAGGAGAAACTTGTTTCAAAGACAACCAAGATGAGCTCTGACCCTATGAGCCAATCAGTTGCAGACTTGCCACCTAAATTGCAGAAGCTTGCTGGTGGAGGAAGAATGGATGGACATCTGCCTCCAAAACTGAGAAAAATGAATTCGGACCGGTTTACATAA

Function

symbol description
kcnj3 Contributes to inward rectifier potassium channel activity. Involved in potassium ion import across plasma membrane. Part of voltage-gated potassium channel complex.

NR:

description
PREDICTED: G protein-activated inward rectifier potassium channel 1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000936 True 585 mRNA 0.49 1 9616316 9616900

Neighbor

gene id symbol gene type direction distance location
AMCG00000934 kcnj3 coding upstream 38615 9576061 ~ 9577701 (+)
AMCG00000935 NA coding upstream 62665 9518281 ~ 9553651 (+)
AMCG00000929 NA coding upstream 160215 9454157 ~ 9456101 (+)
AMCG00000930 fmnl2,LOC107745270,LOC106581828 coding upstream 185260 9395618 ~ 9431056 (+)
AMCG00000927 NA coding upstream 258158 9294471 ~ 9358158 (+)
AMCG00000939 gpd2,LOC105019720,LOC106574870,LOC107660071,LOC106575774 coding downstream 216460 9833360 ~ 9867598 (+)
AMCG00000938 NA coding downstream 321307 9938207 ~ 9945452 (+)
AMCG00000948 NA coding downstream 407388 10024288 ~ 10035708 (+)
AMCG00000946 NA coding downstream 419774 10036674 ~ 10041048 (+)
AMCG00000947 tanc1 coding downstream 584757 10201657 ~ 10278211 (+)
G127278 NA non-coding upstream 238727 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 533435 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 976493 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 1321443 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 1326510 8288789 ~ 8289806 (+)
G127509 NA non-coding downstream 826093 10442993 ~ 10444937 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 2054868 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 2477241 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 2923181 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 2989139 12606039 ~ 12655172 (+)
G127134 NA other upstream 996121 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 4150335 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 7802159 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 7917743 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 8010285 1599696 ~ 1606031 (+)
AMCG00000949 NA other downstream 483383 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 2382764 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 2672050 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 5533375 15150275 ~ 15184392 (+)
G128823 NA other downstream 5792212 15409112 ~ 15420880 (+)

Expression


Co-expression Network