AMCG00000949


Basic Information

Item Value
gene id AMCG00000949
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10100283 ~ 10154187 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000949
GAGGCATGCCAGCTCCTGAGCAGACCCCAGTGTCGGAGGAGGGGCTGCTGCTCGGCACCCGGGAGGGATCCTCCACCACAGGCATGGAGACGGACAGCACGGCAACCACCATCCTCGCCTCGGTCAAAGAGCAGGAGCTCCAGTTTGAACGGCTGACCAGGGAGCTGGAGGTGGAACGACAGATTGTTGCCAGTCAGCTGGAGAGATGCCGACTGGGGGCAGAGTCGCCTAGTGCTGCCAGCATCAGctcATCTGAGAAGTCCTTCCCCTGGAGATCAGAAGATGCCCCAACAGGAGCGACCAAGTCTCGGGTGACGGACCCCCCGCAATCCACATCCTACCGCGTCAGGAGTAAACAGGAGCAAGTTACCCTGTACTCGCCTGAACAGACCTCTCTGCATGAAAGGTCTGTTGGAAATTCCCGCAGCTCAACACAAATGAACTCGTACTCTGATAGCGGTTACCAGGAAACGAGCAGCTACTACAGCAGCCAGAATCTGGTGAAGCCAGAACTGCGATTGCAGCATTCGTTCCCAGGCACTGCCAGTAATTCTACTCTGATGAGAAACACGAAAGCAGAAGGACAGACCATAGTGCAGGCTCCGGTGAACATCGCGGCAGCGTCGGGGCGGGTGATGCGGAGGGTGAGCTCGGTGCCATCGCGTACCCAGTCCCCTGCCTACGGCAGCAGCATCTCGCCCTCCAGGGGCTCCTTAAGGACTTCCCTGGGCAGTGGATACGGCTCCCCAGCTGTCACTGAGCCCAAACCCCTCGCCAGCATATTTTCCACCACAACGCTTCCCTCCTCGCAAAGGCCCGGGTCCCCTTACAGCGCCCAGAAATCCAGCTCCCCGGCGGCTGTGCGCAGGGTCGGCTCCGTCAACTCCAAGCAGTCTGCCAACGCCACCCGGGGCACCTCTCCTTACCAAGTGCTGAGCAACCCCACCAGAATGGGCTCCCCGCTGACCCTGGTGGACCCACAGATGAGGCTGGGGTCCCCCTCCCACGCCCAGCAAaccagctcctcctcccccatccGCTCCGGCATGACGGCGGTCCCACAGCACTATGGCTCCACTCTGCAGAGAGCGTTGCACCACGACACCGATCTGTACGGGCAGTCGTATGACATCTATGACAGGATGATCCCGCCGCGGCCAGACAGCCTCACAGGATTAAGAAGCTCGTATGCCAGTCAGCACAGCCAGCTGGGACAAGATCTTCGGTCAGCCATGTCTCCAGATTTGCATATCACACCCATCTACGAGGGCAGGACGTTTGAGAGCCCTCTGTACCGCAGCCCCAACCATGGGGCAATTGAGCTGCATCATGGGACGCAGACTGCAGTGTACAGGGCTGGCTCAGGTGCAGGAAATCTACAAAGGACCTCCAGTCAACGCAGtgctatgacataccaaagaaGCAACTACGCCCTGAACTCAGCGGCTACCTATGCTGAGCCCTACCGCTCAGCTCAGTACAGACCCTCCGAGTCCAACTATGCCAGGCAGGCTGTCCCTGTTGATGACGGTACCACCAGATCCCCCTCCATAGACAGTATTCAAAAGGACCCCAGGGAATTTGCTTGGCGTGACCCAGAGCTGCCGGAGGTGATTCATATGCTACAACATCAATTTCCCTCGGTTCAAGCGAATGCAGCGGCTTACCTGCAACACCTGTGCTTTGGAGATAATAAAGTGAAAACTGAGgtgtGTCGGCTGGGGGGTATCAAACACTTGGTTGACCTTTTAGACCATAAAGTCTTAGAAGTTCAGAAAAATGCCTGTGGAGCACTAAGAAATCTTGTCTATGGAAAAGCAACAGATGAAAACAAGATCGCTGTGAGAAACGCCGGGGGAGTCCCTGCTTTACTGCGACTGTTGAGAAAGACGGTGGATGCTGAAGTGAGAGAGCTTGTCACTGGAGTTCTGTGGAACTTATCTTCTTGTGATGCAGTAAAAATGACAATCATTCGGGATGCCTTAAGTACTCTGACAAACACTGTGATAATCCCGCACTCTGGATGGAACAGCTCCTCCTTTGATGATGATCACAAACTGAAATTTCACTCTTCACTTGTGCTGCGAAACACCACGGGCTGCCTGAGGAATCTCAGCTCAGCAGGGGAGGAAGCACGGAAACAGATGCGGACGTGTGATGGGCTGGTGGACTCGCTGCTGTACGTCATCAAGGCCTGCGTGAACTCGTCGGACTTCGACAGCAAGTTGGAGATGCCTCAGTCTCGTCTCTTGGGAACCAATGAGTTGGACGGTTTGCTTGGAAATGAGTCCCCTAGTAAGGATGTGGATTCAAGTTgttgggggaagaaaaagaaaaagaaaaagaaatcgaCACAAGATGACCAGTGGGATGGTGTTGGCCCAATTCCTGGATTTTCAAAGCCTCCTAAAGGTGTTGAAATGCTGTGGCACCCGACGGTAGTGAAACCTTATCTCACTCTCCTCGCCGAGAGCTCCAACCCGGCCACACTCGAGGGATCGGCCGGGTCTCTTCAGAATCTCTCCGCGGGCAACTGGAAGTTCGCAGCATACATCCGCGCGGCTGTGAGGAAAGAGAAGGGTCTCCCTATCCTCGTGGAGCTGCTGAGGATGGACAACGACCGGGTGGTGTGTTCCGTCGCAACAGCCTTACGAAACATGGCTCTGGATGTACGAAACAAAGAACTGATCGGCAAATATGCCATGCGAGACTTGGTCAATCGTCTTCCAGGAGGCAACACCACGTTACTGTCCGACGACACCGTGGCAGCGATCTGCTGTACCCTGCATGAGGTCACAAGTAAAAACATGGAGAACGCCAAAGCCCTGGCAGACACTGGAGGGATTGAAAAATTAGTGAATATCACtaaaggaagaggagagagGTACTCAATGAAAGTTGTGAAAGCTGCAGCCCAGGTGCTGAGCACACTGTGGCAGTACAGAGACCTCCGCAGCATCTATAAGAAGGATGGATGGAACCAGAACCATTTCATCACCCCGGTGTCcacactagagagagagaggtacaaATCTCAACCCACCTTACCAACCAGTAACCTACAGATGTCCCCAGTCATCCAATCAGCTGGTAGTGCAACCTCTTCCCCTGCCTTGTTGGGAATAAAAGAACAAAGATCTGATTATCAAAGGACACAGCCATCTATGCAATTTTATAACTATCAAGGCGACAACAATGTACATAAAAATCAGTACACAGGGTCTGGGAAGCCATCTCCATTTTATATAGGCTCCTATTCTTCGCCACCAAGGGAGGAGTCAAGGAGGACACAGCATCAACAGCTGTACTATAGCCAAGATGATCCAAGCAGGAGGAACTACGACACCTACAGAATGTACCTGCAGTCGCCACACAGCTATGAGGACCCTTACTTTGAAGACCAGGTTCATTTTCCCTCTAGTGCGGAATATACTTCACAGCAGCACGGACTCAAATCTACAACAAACTATGTGGACTTCTACTCTACTACACGGCGGCCTTCCTATAGAGCAGAACAGTACCCTGGATCGCCAGACTCTTGGCGAGTCTTTGCGTGTCCAAGCCCCGCCCCCAAAGCAGCGCTGATTGAAGGGCACGAGCGGACCGAGAGAGAGCAGCCAACTTTCAGCATGGTGCAACTGTCGAAATGCGGACTGAAAACCAACCCGGCCCTAAGAGCTGGCCATCCCGCCGCAGTCTTGAGGACCAACTTTTCTGAAGAGCAGCGCACGCTGACTGTCCGCAGCCGAGGCTCTGCGCGCAGAGCAGACATTTGGCATTGCGATGCTCTGGTTAACACCCTGTCTCCCCTCATCGCAGTGAAGGCCGGAGGGAAGCGAGTGGCGAAGAAAGGCGGTGAGGAGAATGGCCCCCCCGAGAAGGAGGCCAGGAGACCTGCAGTGGACAAATTAAGGTCTGCTGCCATGGTTCCCAGAATGCAGTCGATCAGTATCCTCTTAGCCGGGACACTGGAAAAGTTGAGTCATGACTTTCCAGCTACGCCAGCAAGTGTTCGACATAACAAACCCAGACCTGCTGTTGAGAAGTTTCACACTCCAAAGATGATGTACTTCATTCAGCAGCCTCGCAAGTGTTGAAGCGAGAAGGCTGGtcttctgtctgtgtctgtgtaatgGGGGTGTAGCACTTTCTGTACTAGGCTTGTGACAGAAACGAGCATTGGGAAATCTCTTGGTGTGGGATAAtgggagatatatatatatttttttccctgtacAATAAAACTCTTAAATCAAGCTTGTTAAAATCTGAGGTCTTCCTATTTCTGCATACACTGTTGGAGTTTATGCATTCATCGATAAACCCTGTTTCACAATAAATGCAAGATCTTCAGTGTTGTGACAGTAAGTGTTCCCATCTGTTTCTGATGCTTAATAGGTTCTAAAGTCCAGCTTTAGCAGCTGTATAGTAAGTCAGGGTGGCAAGATGGTATTCAGAGGGACCAGTTCAACAGCAGTACGTCTGAATAATggaatatttcattttgatatAGTGAGAGGTGTGCAGTAGCTATTGCTTAATATAAgactttacaaaaatgttaagtTTCTTGCAGGAATCGCAACAATCAAAGGAAAGTAACAATTCCTATGTTTTGCATACAACAGTCCTGTAGTAAGTGTTTGTTGCGGCAGGCCTCCTCTCATCCATTGCACACATTCCAGGAATCCTGTCTACGTATTTTCATAATCTGTAGACTGtgcatcatttattttccagatatCTCAGATTAAACCTATTGGagtatttttctaaaatgtctGAGCAGTGTTATTGGCTTTTCTGTGAAAGCTTTAGAAAGATTTTTATTCTAGGAGTTTCAGGCACGGCCAGGGAAAAAGCTACAATAGCAAATCATTCTGCCATTATGACGATACTTTGCTTTTCAGAGTAAGTCTAGGAGAACTGAAATGTCTTTCTAAATCTATCGCACTAACATTACACTCTAGCAAGCTGGTgagaatgtttgttttgattacCTGCACTATCAATTTCCAGTGCAGATCAATGTGGtgctttataaaaatacattgtcattCTGCGATATAGTAAGCATGTTTTATGACCTTTCCTATAGTCCTCCCccatgtacaaaaaaataatgaataattacaaaTCTTGGCGCTTTTGGTGTGAAGTTTCAATGAATGGGTTGATATTATGTTCTGAATGTCTCTGTTGATAAAGCATTGATTATTGAAACCAATTGCTCAATGTCTTTTGAGTATTTTCTGTAAACCCCtcttatacaaaataataaaaaaattccAAC
>TU159756
CAAGCCCCGCCCCCAAAGCAGCGCTGATTGAAGGGCGTCCTGCGCTTCACCTGCGGCTGCAGACGAGCGGACCGAGAGAGAGCAGCCAACTTTCAGCATGGTGCAACTGTCGAAATGCGGACTGAAAACCAACCCGGCCCTAAGAGCTGGCCATCCCGCCGCAGTGAAGGCCGGAGGGAAGCGAGTGGCGAAGAAAGGCGGTGAGGAGAATGGCCCCCCCGAGAAGGAGGCCAGGAGACCTGCAGTGGACAAATTAAGGTCTGCTGCCATGGTTCCCAGAATGCAGTCGATCAGTATCCTCTTAGCCGGGACACTGGAAAAGTTGAGTCATGACTTTCCAGCTACGCCAGCAAGTGTTCGACATAACAAACCCAGACCTGCTGTTGAGAAGTTTCACACTCCAAAGATGATGTACTTCATTCAGCAGCCTCGCAAGTGTTGAAGCGAGAAGGCTGGtcttctgtctgtgtctgtgtaatgGGGGTGTAGCACTTTCTGTACTAGGCTTGTGACAGAAACGAGCATTGGGAAATCTCTTGGTGTGGGATAAtgggagatatatatatatttttttccctgtacAATAAAACTCTTAAATCAAGCTTGTTAAAATCTGAGGTCTTCCTATTTCTGCATACACTGTTGGAGTTTATGCATTCATCGATAAACCCTGTTTCACAATAAATGCAAGATCTTCAGTGTTGTGACAGTAAGTGTTCCCATCTGTTTCTGATGCTTAATAGGTTCTAAAGTCCAGCTTTAGCAGCTGTATAGTAAGTCAGGGTGGCAAGATGGTATTCAGAGGGACCAGTTCAACAGCAGTACGTCTGAATAATggaatatttcattttgatatAGTGAGAGGTGTGCAGTAGCTATTGCTTAATATAAgactttacaaaaatgttaagtTTCTTGCAGGAATCGCAACAATCAAAGGAAAGTAACAATTCCTATGTTTTGCATACAACAGTCCTGTAGTAAGTGTTTGTTGCGGCAGGCCTCCTCTCATCCATTGCACACATTCCAGGAATCCTGTCTACGTATTTTCATAATCTGTAGACTGtgcatcatttattttccagatatCTCAGATTAAACCTATTGGagtatttttctaaaatgtctGAGCAGTGTTATTGGCTTTTCTGTGAAAGCTTTAGAAAGATTTTTATTCTAGGAGTTTCAGGCACGGCCAGGGAAAAAGCTACAATAGCAAATCATTCTGCCATTATGACGATACTTTGCTTTTCAGAGTAAGTCTAGGAGAACTGAAATGTCTTTCTAAATCTATCGCACTAACATTACACTCTAGCAAGCTGGTgagaatgtttgttttgattacCTGCACTATCAATTTCCAGTGCAGATCAATGTGGtgctttataaaaatacattgtcattCTGCGATATAGTAAGCATGTTTTATGACCTTTCCTATAGTCCTCCCccatgtacaaaaaaataatgaataattacaaaTCTTGGCGCTTTTGGTGTGAAGTTTCAATGAATGGGTTGATATTATGTTCTGAATGTCTCTGTTGATAAAGCATTGATTATTGAAACCAATTGCTCAATGTCTTTTGAGTATTTTCTGTAAACCCCtcttatacaaaataataaaaaaattccAACTTAATCAccttttgtgttgtattttcttctgGACATTTGCTGAATGTTTGTGCTTTGTGTCAGCAAGGTAGTGCCAGGGGATTTCCCTGATTTACACAAAAGGCAGTGTGTGGCAAATCGAGGCTTCACTGTAACACATAAATTACCTTGAAAGCTTGAGAGCATGTCAGTTGTGAGATGAGACCTGGTGTTAACTaatgcttttattcatattcagTCTTAAACCACACATCAGATATATCCCTATATTTGAACTTTTGTCACGATCAGATTGTTCTCCACAATAATGATATGAATACTTTCTGGAAAATTGCTTAATCACATTGTAGGCTAAATATCTAATGCTGGATCAGCAATTAAAATGGAactttgaaacatttaatttttctctgCATTTCAAGTCCTTGTGGTGCAAGTGCATATATGACCACCAGATGGAGCTattgcagttttgcttttgtttgcaaaGCAGCCACCAGCAGACTTCAAAAGACAAACGCATATAAAACGATGTATTTTGAAACCTCTtactaatgcattattaaaaccTGAATTCCAAAGAAGAAACACATCACTGTGATAAACTTAATAACTACAATTTAAAGTCTATTACATCAATAGATGTATGTCCGAAGCAGAGACAATACAGTAGTATGTATGTAGTAGACAATAGTACTGCATTGCTCATTTGGTTCTGGAAACTGTCCTCTTCAGACTGCAAACTGTTCCATTGTTTGTAGTTTGTCTCGCACAGATTGtggcttcatattttaatattgacttGTTTAATTAATGCTCTGCCAGCCAACACCCACACGTTTTTGCCTattgtatgaatacatttgcactttgatttattttaatcatgccGTTGCTGTGGCGAAGCTTCCTTCCCTAAGACTGACATTTCTTACTGAACTACTGCCAGtgataaaactctgtgaaggtTTGTTCCCAGATAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000949 True 5293 mRNA 0.50 27 10100283 10153223
TU159756 False 2602 TUCP 0.40 4 10147857 10154187

Neighbor

gene id symbol gene type direction distance location
AMCG00000946 NA coding upstream 59235 10036674 ~ 10041048 (+)
AMCG00000948 NA coding upstream 64575 10024288 ~ 10035708 (+)
AMCG00000938 NA coding upstream 154831 9938207 ~ 9945452 (+)
AMCG00000939 gpd2,LOC105019720,LOC106574870,LOC107660071,LOC106575774 coding upstream 232685 9833360 ~ 9867598 (+)
AMCG00000936 kcnj3,LOC107671326,LOC107566749,LOC107567067,LOC107657376 coding upstream 483383 9616316 ~ 9616900 (+)
AMCG00000947 tanc1 coding downstream 47470 10201657 ~ 10278211 (+)
AMCG00000952 march7,LOC107584818 coding downstream 227586 10381773 ~ 10391810 (+)
AMCG00000959 NA coding downstream 406369 10560556 ~ 10570905 (+)
AMCG00000957 psmd14,psde,LOC107563735 coding downstream 425613 10579800 ~ 10603207 (+)
AMCG00000958 tbr1,tbr1b,LOC105022444,LOC106586185 coding downstream 451481 10605668 ~ 10611409 (+)
G127278 NA non-coding upstream 722694 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 1017402 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 1460460 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 1805410 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 1810477 8288789 ~ 8289806 (+)
G127509 NA non-coding downstream 288806 10442993 ~ 10444937 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 1517581 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 1939954 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 2385894 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 2451852 12606039 ~ 12655172 (+)
G127134 NA other upstream 1480088 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 4634302 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 8286126 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 8401710 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 8494252 1599696 ~ 1606031 (+)
AMCG00001002 myo3b other downstream 1845477 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 2134763 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 4996088 15150275 ~ 15184392 (+)
G128823 NA other downstream 5254925 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 5306345 15460532 ~ 15463853 (+)

Expression


Co-expression Network