AMCG00000957 (psmd14,psde,LOC107563735)


Basic Information

Item Value
gene id AMCG00000957
gene name psmd14,psde,LOC107563735
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10579800 ~ 10603207 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000957
cgcggatctgcgccgctccaccaatgggatcggagggattctgcagatctgcggaaatctgcgctacacgaatgCGACCTTGTTTTCCGAAGGTATTGACGGAAGCAGAGGCAAATGCCCCGGAAGTGGTTCGAGTGCCGGCGAGGCTGTTTTGAATGAATTCCGGCTGATTCATTGTAGTCGCTAAAGACACAGACACGCCACAATATACGAGTGGATTTAACGTTTCATAGGATTTGTACAGaaacatgGACAGACTCCTGCGGCTTGGGGGAGGAATGCCCGGACTGGGTCAGggCCCTCCAACAGATGCCCCTGCAGTAGATACAGCTGAGCAGGTGTACATCTCTTCCCTTGCATTGCTGAAGATGCTGAAACACGGCCGGGCTGGTGTTCCAATGGAAGTCATGGGTTTGATGCTTGGGGAATTTGTCGATGATTACACTGTGAGAGTGATAGATGTCTTTGCTATGCCTCAGTCAGGAACTGGTGTGAGTGTTGAAGCAGTAGACCCTGTCTTTCAAGCAAAAATGTTAGACATGCTGAAGCAGACTGGGAGGCCCGAGATGGTGGTGGGTTGGTATCACAGTCACCCTGGCTTCGGATGCTGGCTGTCTGGTGTGGATATCAACACTCAGCAGAGCTTTGAGGCCCTGTCGGAGCGCGCTGTGGCCGTAGTGGTGGACCCTATTCAGAGTGTTAAAGGAAAgGTTGTTATTGATGCCTTCAGACTGATCAATGCCAACATGATGGTTTTGGGACATGAACCAAGGCAAACAACATCAAACCTAGGTCATTTAAACAAGCCATCCATCCAGgCTTTAATTCATGGGTTGAACAGGCATTACTATTCGATTACTATCAACTATAGGAAAAATGAACTGGAACAAAAGaTGTTGCTTAACTTGCATAAGAAGAGCTGGATGGAGGGACTGACCCTCCAGGATTACAGTGAGCACTGTAAGCTTAATGAAACGATTGTGAAGGAGATGCTTGAGCTGGCTAAGAACTACAACAAGGCTGTAGAAGAGGAGGATAAGATGACTCCTGAACAGCTGGCAATCAAAAATGTTGGAAAACAGGCAAGATCCAAAGCGCCACTTAGAAGAACACGTTGACGTTCTGATGACATCAAATATTGTGCAGTGCTTAGCAGCCATGTTGGACACAGTGGTCTTTCAGTAGTAAAGCCTTTGCCTAATCATTATTGTACTTACCCCTTCATTATTGCTTCACTGTTTAAAACCTTGTATAACATGTTTATAACTTGGGCTGCTAAAGGCTTGTTATTCAGCACTGTGACAATTCTGTGGGAATAACCCATCCTTCAGATGATGGCCAGATTTTGTCATATTCTAAGCAGGACtaaatgccttttttgttttttcagttcagGAGCAAGTTAATGTTACTTTGACATGTTTTTCTGTAAAGAGGGATTTATTCGTATGTATTGATGTTTACTGGgctcataaataaaaagaacaatgtACCATTTTCACAGATTCAAAACTAAGTAACGGTGCATTCGGACACTGCTCATTCTAAGTATTCAAGTACACAATTgcatatctgttttttt

Function

symbol description
psmd14 Predicted to enable metallopeptidase activity; proteasome binding activity; and thiol-dependent deubiquitinase. Acts upstream of or within response to yeast. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD14 (proteasome 26S subunit, non-ATPase 14).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 14

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0001878 response to yeast biological_process
GO:0000502 proteasome complex cellular_component
GO:0003984 acetolactate synthase activity molecular_function

KEGG:

id description
K03030 PSMD14, RPN11, POH1; 26S proteasome regulatory subunit N11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000957 True 1582 mRNA 0.45 11 10579800 10603207

Neighbor

gene id symbol gene type direction distance location
AMCG00000959 NA coding upstream 8895 10560556 ~ 10570905 (+)
AMCG00000952 march7,LOC107584818 coding upstream 187990 10381773 ~ 10391810 (+)
AMCG00000947 tanc1 coding upstream 301589 10201657 ~ 10278211 (+)
AMCG00000946 NA coding upstream 538752 10036674 ~ 10041048 (+)
AMCG00000948 NA coding upstream 544092 10024288 ~ 10035708 (+)
AMCG00000958 tbr1,tbr1b,LOC105022444,LOC106586185 coding downstream 2461 10605668 ~ 10611409 (+)
AMCG00000967 slc4a10 coding downstream 46405 10649612 ~ 10680286 (+)
AMCG00000966 gran,gca,LOC108242177,LOC106575298 coding downstream 149879 10753086 ~ 10759497 (+)
AMCG00000975 NA coding downstream 608554 11211761 ~ 11213039 (+)
AMCG00000974 scn1lab,LOC107706643,LOC107581364,LOC107705566,LOC107677574 coding downstream 610064 11213271 ~ 11242383 (+)
G127509 NA non-coding upstream 134863 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 1202211 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 1496919 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 1939977 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 2284927 8294518 ~ 8294873 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 1068561 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 1490934 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 1936874 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 2002832 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 2035778 12638985 ~ 12676174 (+)
AMCG00000949 NA other upstream 425613 10100283 ~ 10154187 (+)
G127134 NA other upstream 1959605 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 5113819 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 8765643 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 8881227 1668845 ~ 1698573 (+)
AMCG00001002 myo3b other downstream 1396457 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 1685743 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 4547068 15150275 ~ 15184392 (+)
G128823 NA other downstream 4805905 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 4857325 15460532 ~ 15463853 (+)

Expression


Co-expression Network